View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15395_high_39 (Length: 239)

Name: NF15395_high_39
Description: NF15395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15395_high_39
NF15395_high_39
[»] chr1 (7 HSPs)
chr1 (1-222)||(23618381-23618602)
chr1 (1-222)||(23649727-23649948)
chr1 (1-222)||(23735352-23735573)
chr1 (47-218)||(23626868-23627041)
chr1 (122-161)||(50667396-50667435)
chr1 (122-168)||(50668058-50668104)
chr1 (122-154)||(3801761-3801793)
[»] chr3 (3 HSPs)
chr3 (20-214)||(52806337-52806525)
chr3 (20-119)||(54141993-54142091)
chr3 (43-140)||(53287162-53287261)
[»] chr6 (1 HSPs)
chr6 (43-140)||(11842478-11842577)
[»] chr4 (1 HSPs)
chr4 (123-180)||(41074446-41074503)
[»] chr8 (2 HSPs)
chr8 (121-160)||(39328271-39328310)
chr8 (122-154)||(4522973-4523005)
[»] chr7 (1 HSPs)
chr7 (122-152)||(444180-444210)


Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 23618602 - 23618381
Alignment:
Q  1 ttactttgttgtctttgtctaagtttgttcaatgttgtccaagttgaattattaatacactgtattttctgcacttggttgaattaatttaagttaacca 100  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23618602 ttactttgttgtctttgtctaagtttgttcaacgttgtccatgttgaattattaatacactgtattttctgcacttggttgaattaatttaagttaacca 23618503  T
Q  101 tgtactacatctatctttcaggatttagattttgactttagaaccatgtgaagatgcaattttgttttctttattgtttttattaagatgcaagctctat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23618502 tgtactacatctatctttcaggatttagattttgactttagaaccatgtgaagatgcaattttgttttctttattgtttttattaagatgcaagctctat 23618403  T
Q  201 agtgttgatgcacataggatat 222  Q
    ||||||||||||||||||||||    
T  23618402 agtgttgatgcacataggatat 23618381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 23649948 - 23649727
Alignment:
Q  1 ttactttgttgtctttgtctaagtttgttcaatgttgtccaagttgaattattaatacactgtattttctgcacttggttgaattaatttaagttaacca 100  Q
    |||||||||||||||||||||||||||||||||||| |||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  23649948 ttactttgttgtctttgtctaagtttgttcaatgttttccatgtttaattattattacactgtattttctgcacttggttgaattaatttaagttaacca 23649849  T
Q  101 tgtactacatctatctttcaggatttagattttgactttagaaccatgtgaagatgcaattttgttttctttattgtttttattaagatgcaagctctat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23649848 tgtactacatctatctttcaggatttagattttgactttagaaccatgtgaagatgcaattttgttttctttattgtttttattaagatgcaagctctat 23649749  T
Q  201 agtgttgatgcacataggatat 222  Q
    ||||||||||||||||||||||    
T  23649748 agtgttgatgcacataggatat 23649727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 23735573 - 23735352
Alignment:
Q  1 ttactttgttgtctttgtctaagtttgttcaatgttgtccaagttgaattattaatacactgtattttctgcacttggttgaattaatttaagttaacca 100  Q
    |||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23735573 ttactttgttgtctttgtctaagtttgttcaatgttatccatgttaaattattaatacactgtattttctgcacttggttgaattaatttaagttaacca 23735474  T
Q  101 tgtactacatctatctttcaggatttagattttgactttagaaccatgtgaagatgcaattttgttttctttattgtttttattaagatgcaagctctat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  23735473 tgtactacatctatctttcaggatttagattttgactttagaaccatgtgaagatgcaattttgttttctttattgtttttattaagatgcaagcttgat 23735374  T
Q  201 agtgttgatgcacataggatat 222  Q
    ||||||||||||||| ||||||    
T  23735373 agtgttgatgcacattggatat 23735352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 47 - 218
Target Start/End: Original strand, 23626868 - 23627041
Alignment:
Q  47 aattattaatacactgtattttctgcacttggttgaattaatttaagttaaccatgtactacatctatctttcaggatttagattttgactttagaacca 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||  |||||||||||||| |||||||||    
T  23626868 aattattaatacactgtattttctgcacttggttgaattaatttatgttaaccatgtaccacatctatctttcacaatttagattttgacattagaacca 23626967  T
Q  147 tgtgaagatgcaattttg--ttttctttattgtttttattaagatgcaagctctatagtgttgatgcacatagg 218  Q
    ||||||||||||| ||||  |||||||||||||||||||||| |||||||||||  |||  |||||||||||||    
T  23626968 tgtgaagatgcaactttgttttttctttattgtttttattaacatgcaagctcttgagtaatgatgcacatagg 23627041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 161
Target Start/End: Original strand, 50667396 - 50667435
Alignment:
Q  122 gatttagattttgactttagaaccatgtgaagatgcaatt 161  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  50667396 gatttagattttgactttagaaccatgtcaagatgcaatt 50667435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 50668058 - 50668104
Alignment:
Q  122 gatttagattttgactttagaaccatgtgaagatgcaattttgtttt 168  Q
    |||||| ||||||||||||||||||||||||||| ||||||| ||||    
T  50668058 gatttaaattttgactttagaaccatgtgaagatacaattttttttt 50668104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 3801793 - 3801761
Alignment:
Q  122 gatttagattttgactttagaaccatgtgaaga 154  Q
    ||||||||||||||||||| |||||||||||||    
T  3801793 gatttagattttgactttaaaaccatgtgaaga 3801761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 214
Target Start/End: Complemental strand, 52806525 - 52806337
Alignment:
Q  20 taagtttgttcaatgttgtccaagttgaattattaatacactgtattttctgcacttggttgaattaatttaagttaaccatgtactacatctatctttc 119  Q
    |||||||| ||||||||||||| |||||| ||| ||||     | ||||||||| ||||||||||||| ||  ||||||  || | | | || |||||||    
T  52806525 taagtttgctcaatgttgtccatgttgaactatgaata-----tgttttctgcagttggttgaattaacttgggttaact-tgcattccttccatctttc 52806432  T
Q  120 aggatttagattttgactttagaaccatgtgaagatgcaattttgttttctttattgtttttattaagatgcaagctctatagtgttgatgcaca 214  Q
    | ||||||||||||||||||||||| |||||||||||||||| | |||||||| |||||||||| || ||| |||||||  |||||| |||||||    
T  52806431 acgatttagattttgactttagaacaatgtgaagatgcaattcttttttctttcttgtttttatgaacatggaagctcttgagtgttaatgcaca 52806337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 54141993 - 54142091
Alignment:
Q  20 taagtttgttcaatgttgtccaagttgaattattaatacactgtattttctgcacttggttgaattaatttaagttaaccatgtactacatctatctttc 119  Q
    |||||||| ||||||||||||| |||||| |||||||| || |||||||||| | ||||||||||||||||  ||||| |||| ||| |||| |||||||    
T  54141993 taagtttgctcaatgttgtccatgttgaactattaatataccgtattttctgtagttggttgaattaatttgggttaa-catgcactccatccatctttc 54142091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 140
Target Start/End: Original strand, 53287162 - 53287261
Alignment:
Q  43 gttgaattattaatacactgtattttctgcacttggttgaattaatttaagttaaccatgtactacatct---atctttcaggatttagattttgacttt 139  Q
    |||||| |||||||| ||||||||||||||| |||||||||||| |||  ||||| |||| ||| |||||   |||||||| ||||||||||||||||||    
T  53287162 gttgaactattaatatactgtattttctgcagttggttgaattattttgggttaa-catgcactccatctatcatctttcatgatttagattttgacttt 53287260  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 140
Target Start/End: Complemental strand, 11842577 - 11842478
Alignment:
Q  43 gttgaattattaatacactgtattttctgcacttggttgaattaatttaagttaaccatgtactacatct---atctttcaggatttagattttgacttt 139  Q
    |||||| |||||||| ||||||||||||||| |||||||||||| |||  ||||| |||| ||| |||||   |||||||| ||||||||||||||||||    
T  11842577 gttgaactattaatatactgtattttctgcagttggttgaattattttgggttaa-catgcactccatctatcatctttcatgatttagattttgacttt 11842479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 41074446 - 41074503
Alignment:
Q  123 atttagattttgactttagaaccatgtgaagatgcaattttgttttctttattgtttt 180  Q
    |||||||||||||||||| |||||||||||||| ||||| | ||| ||||| ||||||    
T  41074446 atttagattttgactttaaaaccatgtgaagatacaattctttttgctttaatgtttt 41074503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 160
Target Start/End: Original strand, 39328271 - 39328310
Alignment:
Q  121 ggatttagattttgactttagaaccatgtgaagatgcaat 160  Q
    ||||||||||||||||| ||||||||||||||||| ||||    
T  39328271 ggatttagattttgactgtagaaccatgtgaagatacaat 39328310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 4523005 - 4522973
Alignment:
Q  122 gatttagattttgactttagaaccatgtgaaga 154  Q
    ||||||||||||||||||| |||||||||||||    
T  4523005 gatttagattttgactttaaaaccatgtgaaga 4522973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 152
Target Start/End: Original strand, 444180 - 444210
Alignment:
Q  122 gatttagattttgactttagaaccatgtgaa 152  Q
    |||||||||||||||||||||||||||||||    
T  444180 gatttagattttgactttagaaccatgtgaa 444210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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