View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15395_high_4 (Length: 560)
Name: NF15395_high_4
Description: NF15395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15395_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 15 - 541
Target Start/End: Original strand, 8480287 - 8480813
Alignment:
| Q |
15 |
caaaggcagatcctcaaaaaacaaaagaagaagacaaaccatttggcttgtaggtacttgactggctagacttgtacttagcatggactaaacatgcaag |
114 |
Q |
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| T |
8480287 |
caaaggcagatcctcaaaaaacaaaagaagaagacaaaccatttggcttgtaggtacttgactggctagacttgtacttagcatggactaaacatgcaag |
8480386 |
T |
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| Q |
115 |
ctgcaccaacatgcaaaaacacattaacaaagccaaaatcagaatataaataaatatataaaccagatacatattcatcatatggattaaaacaaaactc |
214 |
Q |
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| T |
8480387 |
ctgcaccaacatgcaaaaacacattaacaaagccaaaatcagaatataaataaatatataaaccagatacatattcatcatatggattaaaacaaaactc |
8480486 |
T |
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| Q |
215 |
accgagaagtaacatttaactgatggcacccaagtattagagctaccagtatcaaaaatcacagtaaaagtctgaggaggagtaccaatggatatttcac |
314 |
Q |
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| T |
8480487 |
accgagaagtaacatttaactgatggcacccaagtattagagctaccagtatcgaaaatcacagtaaaagtctgaggaggagtaccaatggatatttcac |
8480586 |
T |
|
| Q |
315 |
catagtactgagcatccaagtaattcttcaatgcaacaacatcagcttctccagctcctccaaggatgtttttggaagcataattcctaatggaagacca |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8480587 |
catagtactgagcatccaagtaattcttcaatgcaacaacatcagcttctccagctcctccaaggatgtttttggaagcataattcctaatggaagacca |
8480686 |
T |
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| Q |
415 |
tgatgattcacaacccttcgaccccaacaagtttttgggttccaatttgttctttttcaaaccgatcctacgcaacccttcatttggtgcacaggaaaca |
514 |
Q |
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| T |
8480687 |
tgatgattcacaacccttcgaccccaacaagtttttgggttccagtttgttctttttcaaaccgatcctacgcaacccttcatttggtgcacaggaaaca |
8480786 |
T |
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| Q |
515 |
agagaaaacaatagggtccacaaacac |
541 |
Q |
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| T |
8480787 |
agagaaaacaagagtgtccacaaacac |
8480813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 250 - 364
Target Start/End: Original strand, 55356718 - 55356832
Alignment:
| Q |
250 |
attagagctaccagtatcaaaaatcacagtaaaagtctgaggaggagtaccaatggatatttcaccatagtactgagcatccaagtaattcttcaatgca |
349 |
Q |
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||||||||| |||||||| ||||| ||||| || ||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| ||| |
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| T |
55356718 |
attagagctgccagtatcgaaaatgacagtgaacttctgaggagaggtaccaatggatatttcaccatagtattgagcatctaagtaattcttcaaagca |
55356817 |
T |
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| Q |
350 |
acaacatcagcttct |
364 |
Q |
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|||| ||||| |||| |
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| T |
55356818 |
acaatatcagtttct |
55356832 |
T |
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