View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15395_high_5 (Length: 524)
Name: NF15395_high_5
Description: NF15395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15395_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 9 - 504
Target Start/End: Original strand, 9643921 - 9644416
Alignment:
| Q |
9 |
agcagagaggattttaagaagtgcattagagagagctttgatagtcgaagaagttcagaatgaaaactttgacttgaagagacagattgagatctgccag |
108 |
Q |
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| T |
9643921 |
agcagagaggattttaagaagtgcattagagagagctttgatagtcgaagaagttcagaatgaaaactttgacttgaagagacagatcgagatctgccag |
9644020 |
T |
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| Q |
109 |
gcatatatctttttatgtttccatttccgtgtatagtttctatatcaaacggcaatcagtttcagcaaaatttatacaacttttcatgaacaggaggaga |
208 |
Q |
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| T |
9644021 |
gcatatatctttttatgtttccatttccgtgtatagtttctatatcaaacggcaatcagtttcagcaaaatttatacaacttttcatgaacaggaggaga |
9644120 |
T |
|
| Q |
209 |
acaaaatcttggagaaaagccaccgtcaaaagattgtggaagttgagaaacttagccaaacaattcatgaacttgaggagctcatcttatcaaatggagc |
308 |
Q |
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| T |
9644121 |
acaaaatcttggagaaaagccaccgtcaaaagattgtggaagttgagaaacttagccaaacaattcatgaacttgaggagctcatcttatcaaatggagc |
9644220 |
T |
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| Q |
309 |
caccgctaatctcattcgcgattataagcgacagatttctgagttgcaagtaggcatatgttaataatgttatgaccacttgcattttggactaactttt |
408 |
Q |
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| T |
9644221 |
caccgctaatctcattcgcgattataagcgacagatttctgagttgcaagtaggcatatgttaataatgttatgaccacttgcattttggactaactttt |
9644320 |
T |
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| Q |
409 |
acataggacttttgtatctactggtttatctatacaataacatggttttagcataaattttcaggaggagaagaggacactagagagggaattagc |
504 |
Q |
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| T |
9644321 |
acatgggacttttgtatctactggtttatctatacaataacatggttttagcataaattttcaggaggagaagaggacactagagagggaattagc |
9644416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 197 - 360
Target Start/End: Original strand, 56006944 - 56007107
Alignment:
| Q |
197 |
aacaggaggagaacaaaatcttggagaaaagccaccgtcaaaagattgtggaagttgagaaacttagccaaacaattcatgaacttgaggagctcatctt |
296 |
Q |
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| T |
56006944 |
aacaggaggagaccaaaattttagagaaatctcaccgccaaaagattcttgaagttgaaaagcttagccaaaccattcaagaacttgaggaagtcatctt |
56007043 |
T |
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| Q |
297 |
atcaaatggagccaccgctaatctcattcgcgattataagcgacagatttctgagttgcaagta |
360 |
Q |
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| T |
56007044 |
agctaatggcgctacagctaacgttgttcgcgattaccaaagacagttttctgaattgcaagta |
56007107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 56006755 - 56006856
Alignment:
| Q |
10 |
gcagagaggattttaagaagtgcattagagagagctttgatagtcgaagaagttcagaatgaaaactttgacttgaagagacagattgagatctgccagg |
109 |
Q |
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|||||||||||||| ||||||| |||||| ||| | ||| | ||||||||||| ||| |||| ||||| || |||||||||||||| |||| ||||| |
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| T |
56006755 |
gcagagaggattttgcaaagtgcactagagaaggctctaataattgaagaagttcaaaatcaaaattttgatttaaagagacagattgatatctaccagg |
56006854 |
T |
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| Q |
110 |
ca |
111 |
Q |
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|| |
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| T |
56006855 |
ca |
56006856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 461 - 498
Target Start/End: Original strand, 56007183 - 56007220
Alignment:
| Q |
461 |
ataaattttcaggaggagaagaggacactagagaggga |
498 |
Q |
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| T |
56007183 |
ataaattttcaggaggagaaaaggacactagagaggga |
56007220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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