View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15395_high_9 (Length: 443)
Name: NF15395_high_9
Description: NF15395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15395_high_9 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 443
Target Start/End: Original strand, 34393393 - 34393802
Alignment:
| Q |
18 |
agataagaaagaagataataaggacactaacacaccaannnnnnnnatccagattggtcaaaatatgatatactttgagggagagagcatttgggggaga |
117 |
Q |
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| T |
34393393 |
agataagaaagaagataataaggacactaacacaccaattttttttatccagattggtcaaaatatgatatactttgaggga----------------ga |
34393476 |
T |
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| Q |
118 |
gagcagctaacaaatcaactgtgataaagttgatacaaagagattacaagaaattagcttaaaaacgtccaagtacacatgcaacataattctatctata |
217 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34393477 |
gagcagctcacaaatcaactgtgataaagttgatacaaagagattacagaaaattagcttaaaaacgtacaagtacacatgcaacataattctatctata |
34393576 |
T |
|
| Q |
218 |
agattatacatctcaaatgtctaatttattcttaaatttgcttaaaacgcacaagtacgctataataaatgatttaattagcagaaatacaaatacttgc |
317 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||| |
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| T |
34393577 |
agattatacagctcaaatgtctaatttattcttaaatttgcttaaaacgcacaagtacactacaataaatgatttaattagcagaaatacatatacttgc |
34393676 |
T |
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| Q |
318 |
ttttagatgtatgttggaccatgtgtccaggggaaaatagttcgttctcctctctttctcttgctcttaggcgcgcctgaatcctttgagacatgcaagc |
417 |
Q |
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| T |
34393677 |
ttttagatgtatgttggaccatgtgtccagggtaaattagttcgttctcctctccttctcttgctcttaggcgcccctgaatcctttgagacatgcaagc |
34393776 |
T |
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| Q |
418 |
ccccaaaggctcatattagagtgcac |
443 |
Q |
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| T |
34393777 |
ccccaaaggctcatattagagtgcac |
34393802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 181
Target Start/End: Complemental strand, 28770794 - 28770761
Alignment:
| Q |
148 |
tgatacaaagagattacaagaaattagcttaaaa |
181 |
Q |
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| T |
28770794 |
tgatacaaagatattacaagaaattagcttaaaa |
28770761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 21711261 - 21711332
Alignment:
| Q |
109 |
tgggggagagagcagctaacaaatcaactgtgataaagttgatacaaagagattacaagaaattagcttaaaa |
181 |
Q |
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| T |
21711261 |
tgggggagagagcagctctcaaatccactatgatgaaagtgttacaaagag-ttacaagaaattagcttaaaa |
21711332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 8370535 - 8370464
Alignment:
| Q |
109 |
tgggggagagagcagctaacaaatcaactgtgataaagttgatacaaagagattacaagaaattagcttaaaa |
181 |
Q |
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| T |
8370535 |
tgggggagagagcagctctccaatccactatgatgaaagtgttacaaagag-ttacaagaaattagcttaaaa |
8370464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 183
Target Start/End: Original strand, 37781939 - 37781974
Alignment:
| Q |
148 |
tgatacaaagagattacaagaaattagcttaaaaac |
183 |
Q |
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| T |
37781939 |
tgatacaaagaggttacaagaaattagcttaaaaac |
37781974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 32737033 - 32736983
Alignment:
| Q |
131 |
atcaactgtgataaagttgatacaaagagattacaagaaattagcttaaaa |
181 |
Q |
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||||||| |||| ||| |||||||||||| |||||| |||||||||||||| |
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| T |
32737033 |
atcaactatgatgaaggtgatacaaagaggttacaaaaaattagcttaaaa |
32736983 |
T |
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