View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15395_low_1 (Length: 1474)
Name: NF15395_low_1
Description: NF15395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15395_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 507 - 1025
Target Start/End: Complemental strand, 2787519 - 2786998
Alignment:
| Q |
507 |
gtctaacgctagtttggcctatgcacattttgtcggggactgaaatgagccttcactcttttaannnnnnnnnatatatacattaaaatcgtgtgttaag |
606 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2787519 |
gtctaacgctagtttggcctatgcacattttgtcggagaccaaaatgagccttcactcttttaaaaatcttt--tatatacattaaaatcgtgtgttaag |
2787422 |
T |
|
| Q |
607 |
aatcttaattgtnnnnnnnntcattttaacaaattctcttaaaatctctcac-gagtcaataaaaacccacaaattttttaaacaatatcg----ttata |
701 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2787421 |
aatcttaattgtaaaaaaaatcattttaacaaattctcttaaaatctctcactgagtcaataaaaacccacaaattttttaaacaatatcgctatatata |
2787322 |
T |
|
| Q |
702 |
tcatgcgaaagaaattataacaaaaaggatcacaaaagagatttataaaccaatgaaaagatagagtttgcggaattcatgaattgtttgttgaaaagtg |
801 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2787321 |
tcatgcgaaagaaattataacaaaaaggatcacaaaagagatttataaaccaatgaaaagatagagtttgcggaattcatgaattgtttgttgaaaagtg |
2787222 |
T |
|
| Q |
802 |
acggaagtcaacactaaagacttggtggaatacagttggcgatgttatcgtttcaacggtaaagaattgatggaatatacgtggcaatgctatcatgata |
901 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
2787221 |
acggaagtcaacactaaagacttggtggaatacagttggcgatgttatcgtttcaacggtaaagaattgatggaatacacgtggcgatgctatcatgata |
2787122 |
T |
|
| Q |
902 |
ttttggttcgctattggcgatgttattgtttcaacggtaaagaattaatggaatacatgtggcgatgctatcgtgatattttgattcgctacaagtagcg |
1001 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||| |
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| T |
2787121 |
ttttggttcgctattggcgatgttatcgtttcaacggtaaagaattaatggaatacacgtggtgatgctatcgtgatattttggttcgctacaagtagcg |
2787022 |
T |
|
| Q |
1002 |
tcaccctttttaaaaattaaaaga |
1025 |
Q |
| |
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|||||| ||||||||||||||||| |
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| T |
2787021 |
tcacccattttaaaaattaaaaga |
2786998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1096 - 1462
Target Start/End: Complemental strand, 2786927 - 2786561
Alignment:
| Q |
1096 |
tgtgtgcactcactctcttttgtttttgcgttcttgtttcaaactttcaacaccatggccgagaagaaggtcatcgttgtcgtcgaaggcaccgctgcga |
1195 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
2786927 |
tgtgtgcactcactctcttttgtttttgcgctcttgtttcaaactttcaacaccatggcggagaagaaggtcatcgttgtcgtcgaaagcaccgctgcga |
2786828 |
T |
|
| Q |
1196 |
tgggaccgcactgggatactcttcaagtggattatctcaacaaaatcgccaagtccctttgtgggaacgaacctgctgtttccaactctcagtttgccct |
1295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2786827 |
tgggaccgcactgggatactcttcaagtggattatctcaacaaaatcgtcaagtccctttgtgggaacgaacctgctgtttccaacgctcagtttgccct |
2786728 |
T |
|
| Q |
1296 |
agtcacctatcatactcatggcatttatgctcctgttctcgtgcaacgttctggctggacaagagatccagaagttttcttagattggttatcatctata |
1395 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2786727 |
agtcacctatcatactcatggcatttattctcctgttctcgtgcaacgttctggctggacaagagatccagaagttttcttagattggttatcatctata |
2786628 |
T |
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| Q |
1396 |
tccttttccggtggtggttttaatgacaccgctgtcgctgaagggcttgctgaagctttgatgatgt |
1462 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2786627 |
tccttttccggtggtggtttaaatgacaccgctgtcgctgaagggcttgctgaagctttgatgatgt |
2786561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 175; E-Value: 2e-93
Query Start/End: Original strand, 18 - 362
Target Start/End: Complemental strand, 2787984 - 2787655
Alignment:
| Q |
18 |
catggtgagggataaagacctggaagtgatgaataatcaagtgttagggcacaatctggtatagtcccaaaaatatgattaatcttatatttcggttttc |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | || || |||||||||||||||| |
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| T |
2787984 |
catggtgagggataaagacctggaagtgatgaataatcaagtgttatggcacaatctgatttaagcc-----------------ttatatttcggttttc |
2787902 |
T |
|
| Q |
118 |
ttcttacatttcctcacacacccttctatttcccattttttgtgagtatcagtgtcagtgatgacgatggttgtttcgaccaaagaagtagaccgacnnn |
217 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
2787901 |
ttcttacatttcctcacacacccttctatttcccattttttgtgagtatcagtttcaatgatgacgatggttgttttgaccaaagaagtagaccgacaaa |
2787802 |
T |
|
| Q |
218 |
nnnngaatcaatttagtttcataaaatttaacaaattgcatttttatcatggag--nnnnnnnntgactaatttcagttttaattaaatttttataggga |
315 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2787801 |
aaaagaatcaatttagtttcataaaatttaacaaattgcatttttgtcatggagaaaaaaaaaatgactaatttcagttttaattaaatttttataggga |
2787702 |
T |
|
| Q |
316 |
ccaaatcatcccnnnnnnnntttgtagagacttaactgtcccttatc |
362 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||| |
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| T |
2787701 |
ccaaatcatcccaaaaaaattttgtagagacttaactgtcccttatc |
2787655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 1e-35
Query Start/End: Original strand, 369 - 458
Target Start/End: Complemental strand, 2787626 - 2787537
Alignment:
| Q |
369 |
aagacgactgtattgtcatatattcccagacaaggttcaaaaataggaagaaaattgttggttgaagacaaaaattgacggaatgactaa |
458 |
Q |
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||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2787626 |
aagacgactgtattgtcatatattcccagtcacggttcaaaaataggaagaaaattgttggttgaagacgaaaattgacggaatgactaa |
2787537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 4e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 4e-26
Query Start/End: Original strand, 1333 - 1458
Target Start/End: Original strand, 22515971 - 22516096
Alignment:
| Q |
1333 |
ctcgtgcaacgttctggctggacaagagatccagaagttttcttagattggttatcatctatatccttttccggtggtggttttaatgacaccgctgtcg |
1432 |
Q |
| |
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|||||||||||| |||||||||||||||| ||||| ||||||||| | ||| || ||||||| | ||||| |||||||||||||||||| | ||| | | |
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| T |
22515971 |
ctcgtgcaacgtactggctggacaagagacccagatgttttcttacagtggctagaatctataccattttctggtggtggttttaatgacgcagctattg |
22516070 |
T |
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| Q |
1433 |
ctgaagggcttgctgaagctttgatg |
1458 |
Q |
| |
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|||||||||||||||||||| ||||| |
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| T |
22516071 |
ctgaagggcttgctgaagctctgatg |
22516096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 22363709 - 22363679
Alignment:
| Q |
18 |
catggtgagggataaagacctggaagtgatg |
48 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
22363709 |
catggtgagggataaagacctggaagtgatg |
22363679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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