View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15395_low_11 (Length: 431)
Name: NF15395_low_11
Description: NF15395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15395_low_11 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 11 - 431
Target Start/End: Original strand, 2786164 - 2786584
Alignment:
| Q |
11 |
acatcatcaactttaacatgaatttgatttgaaggcaagtttgttgttccggaaggactcaaggcagtgcgggcttccctgaaaccttctgatatcaaaa |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2786164 |
acatcgtcaactttaacatgaatttgatttgaaggcaagtttgttgttccggaaggactcaaggcagtgcgggcttccctgaaaccttctgatatcaaaa |
2786263 |
T |
|
| Q |
111 |
caagagggggtttcgcatcaacaggtggattgacagctccagcattgtagatggctttgattttgggaagatttcttgggcagatgacagatagagaaat |
210 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2786264 |
caagagggggtttagcatcaaccggtggattgacagctccagcattgtagatggctttgattttgggaagatttcttgggcagatgacagatagagaaat |
2786363 |
T |
|
| Q |
211 |
agaaaactgcggaaatgctttagcaacatcttcagcatcataaaactggttacctgattccgagtcaatggattcattcttcttgggaacatatattggt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2786364 |
agaaaactgcggaaatgctttagcaacatcttcagcatcataaaactggttacctgattccgagtcaatggattcattcttcttgggaacatatattggt |
2786463 |
T |
|
| Q |
311 |
ctcttcaatggataaggattactggctgccacaagaatacagtgcattggcatatcaacattcttttgattagggctttcactttgagacggggagaaca |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2786464 |
ctcttcaatggataaggattactggctgccacaagaatacagtgcattggcatatcaacattcttttgattagggctttcactttgagacggggagaaca |
2786563 |
T |
|
| Q |
411 |
tcatcaaagcttcagcaagcc |
431 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
2786564 |
tcatcaaagcttcagcaagcc |
2786584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 296 - 412
Target Start/End: Complemental strand, 22517262 - 22517146
Alignment:
| Q |
296 |
ggaacatatattggtctcttcaatggataaggattactggctgccacaagaatacagtgcattggcatatcaacattcttttgattagggctttcacttt |
395 |
Q |
| |
|
|||||||||| ||| ||| |||||| ||||||||||||||||||||||| ||||||||||| | |||| ||||||| ||||| ||| | |||||| |
|
|
| T |
22517262 |
ggaacatataccggtgtctgcaatgggtaaggattactggctgccacaaggatacagtgcatgttcgtatccacattctgctgatttaggcctccacttt |
22517163 |
T |
|
| Q |
396 |
gagacggggagaacatc |
412 |
Q |
| |
|
|||| |||| ||||||| |
|
|
| T |
22517162 |
gagaaggggggaacatc |
22517146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 22517521 - 22517462
Alignment:
| Q |
152 |
gcattgtagatggctttgattttgggaagatttcttgggcagatgacagatagagaaata |
211 |
Q |
| |
|
||||||||||||||||| ||||||||||| | | ||||||||| ||| |||||||||||| |
|
|
| T |
22517521 |
gcattgtagatggctttaattttgggaagttgttttgggcagacgaccgatagagaaata |
22517462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 293
Target Start/End: Complemental strand, 22517356 - 22517280
Alignment:
| Q |
217 |
ctgcggaaatgctttagcaacatcttcagcatcataaaactggtt-acctgattccgagtcaatggattcattcttct |
293 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||| |||||||| || || || ||||||||||||||| |||||| |
|
|
| T |
22517356 |
ctgcggaaacgctttagcaacagcttcagcatcatataactggttcacttggtt-tgagtcaatggattcagtcttct |
22517280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 22518281 - 22518232
Alignment:
| Q |
66 |
gactcaaggcagtgcgggcttccctgaaaccttctgatatcaaaacaaga |
115 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||| |||| |||| |
|
|
| T |
22518281 |
gactcaaggcactgcgggcttccctaaaaccttctgatattaaaataaga |
22518232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University