View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15395_low_13 (Length: 417)
Name: NF15395_low_13
Description: NF15395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15395_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 21 - 407
Target Start/End: Original strand, 46229148 - 46229535
Alignment:
| Q |
21 |
gttcaaataatatttattgtttttcaattataagatataaacggtaagtgagctgctataaactcggaaactaattttgcatgcagtggtgctatatctc |
120 |
Q |
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| T |
46229148 |
gttcaaataatatttattgtttttcaattataagatataaacggtaagtgagctgctataaactcggaaactaattttgcatgcagtggtgctatatctc |
46229247 |
T |
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| Q |
121 |
cggataaaacttctcacgaactcatcacgacagcaaaacatcagtggtaacaaaaattaaggaattggttttttagtgggtcgtgaagcactcgtgaagt |
220 |
Q |
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| T |
46229248 |
cggataaaacttctcacgaactcataacgatagcaaaacatcagtggtaacaaaaattaaggaattggttttttagtggttcgtgaagcactcgtgaagt |
46229347 |
T |
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| Q |
221 |
ttattgtcgctataacaagcattttccaattgcatcatctccttcactctcctctacatctttctcc-ttactttcacctaatagttgaagtttttggga |
319 |
Q |
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| T |
46229348 |
ttattgtcgctataacaagcattttccaattgcatcatctccttcactctcctctacatctttctcctttactttcacctaatagttgaagtttttggga |
46229447 |
T |
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| Q |
320 |
tacaattgattcctatatatgaaacatgaaatctgagctagccttcaagccacatatttatgcaacttggttttcattgtggcctatg |
407 |
Q |
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| T |
46229448 |
tacaattgattcctatatatgtaacatgaaatctgagctagccttcaagccacatatttatgcaacttggttttcattgtggcctatg |
46229535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 46228771 - 46228713
Alignment:
| Q |
189 |
ttttttagtgggtcgtgaagcactcgtgaagtttattgtcgctataacaagcattttcc |
247 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||| |
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| T |
46228771 |
ttttttagtgggtcgtgaagcattcgtgaagtttattgtcgttgtaacaagcattttcc |
46228713 |
T |
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