View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15395_low_15 (Length: 412)

Name: NF15395_low_15
Description: NF15395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15395_low_15
NF15395_low_15
[»] chr2 (19 HSPs)
chr2 (10-396)||(34393827-34394206)
chr2 (134-197)||(32143613-32143676)
chr2 (136-225)||(35470314-35470403)
chr2 (136-203)||(29108779-29108846)
chr2 (136-208)||(15658789-15658861)
chr2 (144-195)||(7645836-7645887)
chr2 (136-179)||(25749688-25749731)
chr2 (136-182)||(8186310-8186356)
chr2 (149-202)||(7461570-7461623)
chr2 (136-189)||(33635700-33635753)
chr2 (85-124)||(45326664-45326703)
chr2 (136-195)||(45716500-45716559)
chr2 (136-170)||(45326731-45326765)
chr2 (136-209)||(8329639-8329712)
chr2 (139-204)||(9620639-9620704)
chr2 (136-177)||(22348735-22348776)
chr2 (134-195)||(28580426-28580487)
chr2 (134-225)||(2128229-2128318)
chr2 (139-183)||(29740718-29740762)
[»] chr8 (17 HSPs)
chr8 (134-207)||(8457551-8457624)
chr8 (136-207)||(34127649-34127721)
chr8 (136-212)||(44362275-44362351)
chr8 (136-201)||(41646428-41646493)
chr8 (136-198)||(16938897-16938959)
chr8 (134-183)||(30157744-30157793)
chr8 (134-187)||(30362828-30362881)
chr8 (136-200)||(7662310-7662374)
chr8 (136-195)||(27924484-27924543)
chr8 (136-195)||(42563194-42563253)
chr8 (137-183)||(18087247-18087293)
chr8 (134-195)||(40891900-40891961)
chr8 (135-195)||(45114687-45114747)
chr8 (136-195)||(4366322-4366381)
chr8 (171-225)||(23722251-23722305)
chr8 (143-200)||(13015434-13015491)
chr8 (151-195)||(30157849-30157893)
[»] chr4 (17 HSPs)
chr4 (136-201)||(49081305-49081370)
chr4 (134-225)||(42274337-42274427)
chr4 (136-201)||(1051784-1051849)
chr4 (136-231)||(7633185-7633279)
chr4 (134-213)||(26194523-26194602)
chr4 (134-201)||(47089207-47089274)
chr4 (134-195)||(37858443-37858505)
chr4 (134-183)||(53374995-53375044)
chr4 (136-204)||(32056314-32056382)
chr4 (143-207)||(38609087-38609151)
chr4 (136-195)||(3168397-3168456)
chr4 (138-203)||(33033249-33033313)
chr4 (136-204)||(47742794-47742862)
chr4 (136-195)||(36619931-36619990)
chr4 (136-182)||(1646623-1646669)
chr4 (134-195)||(47750470-47750531)
chr4 (136-200)||(12763429-12763493)
[»] chr7 (12 HSPs)
chr7 (134-195)||(30198321-30198382)
chr7 (134-193)||(22342310-22342369)
chr7 (136-202)||(8919379-8919445)
chr7 (136-212)||(9047081-9047157)
chr7 (136-195)||(30898099-30898158)
chr7 (136-206)||(6221098-6221168)
chr7 (134-203)||(25790125-25790194)
chr7 (134-195)||(34224320-34224381)
chr7 (138-195)||(45879115-45879172)
chr7 (136-195)||(40417689-40417748)
chr7 (154-236)||(24495335-24495417)
chr7 (157-231)||(41999350-41999424)
[»] chr3 (19 HSPs)
chr3 (134-184)||(37677366-37677416)
chr3 (136-190)||(40892801-40892855)
chr3 (134-195)||(27659758-27659819)
chr3 (134-194)||(34664266-34664326)
chr3 (134-200)||(32600647-32600713)
chr3 (143-225)||(55142353-55142435)
chr3 (143-191)||(7230635-7230683)
chr3 (139-195)||(28233463-28233519)
chr3 (140-208)||(53653103-53653171)
chr3 (136-195)||(4275483-4275542)
chr3 (136-195)||(14750337-14750396)
chr3 (134-209)||(31064572-31064647)
chr3 (134-189)||(31316006-31316061)
chr3 (136-195)||(38832958-38833017)
chr3 (134-201)||(39149129-39149196)
chr3 (136-198)||(9099178-9099240)
chr3 (149-195)||(49980316-49980362)
chr3 (149-194)||(6876241-6876286)
chr3 (134-163)||(34723053-34723082)
[»] chr1 (9 HSPs)
chr1 (136-201)||(46598216-46598281)
chr1 (143-195)||(43638401-43638453)
chr1 (136-207)||(963944-964015)
chr1 (136-195)||(6395467-6395526)
chr1 (134-196)||(42887974-42888036)
chr1 (136-195)||(19998591-19998650)
chr1 (154-195)||(27919167-27919208)
chr1 (143-196)||(49372566-49372618)
chr1 (136-204)||(35538948-35539016)
[»] scaffold0603 (2 HSPs)
scaffold0603 (141-225)||(6933-7017)
scaffold0603 (136-183)||(7097-7144)
[»] chr6 (9 HSPs)
chr6 (136-225)||(8052180-8052270)
chr6 (140-225)||(19742140-19742224)
chr6 (136-201)||(31330516-31330581)
chr6 (136-212)||(29608435-29608511)
chr6 (134-213)||(31955638-31955717)
chr6 (149-207)||(2656420-2656478)
chr6 (134-203)||(21608205-21608274)
chr6 (134-188)||(30533714-30533768)
chr6 (139-183)||(6030953-6030997)
[»] scaffold0007 (1 HSPs)
scaffold0007 (143-203)||(185507-185567)
[»] chr5 (17 HSPs)
chr5 (134-194)||(19366807-19366867)
chr5 (143-201)||(24181449-24181507)
chr5 (139-201)||(33054122-33054184)
chr5 (134-192)||(41868831-41868889)
chr5 (153-194)||(7313276-7313317)
chr5 (160-209)||(15966819-15966868)
chr5 (136-208)||(19336835-19336906)
chr5 (160-204)||(35457331-35457375)
chr5 (136-195)||(9922953-9923012)
chr5 (136-195)||(14148323-14148382)
chr5 (136-195)||(26440086-26440145)
chr5 (143-201)||(26296444-26296502)
chr5 (145-195)||(29144385-29144435)
chr5 (139-196)||(5412005-5412062)
chr5 (154-183)||(22732006-22732035)
chr5 (143-195)||(5471543-5471595)
chr5 (216-256)||(10979937-10979977)
[»] scaffold0009 (1 HSPs)
scaffold0009 (136-195)||(140312-140371)
[»] scaffold0735 (1 HSPs)
scaffold0735 (134-196)||(927-989)
[»] scaffold0257 (1 HSPs)
scaffold0257 (134-197)||(18824-18887)
[»] scaffold1095 (1 HSPs)
scaffold1095 (136-205)||(923-992)
[»] scaffold0191 (1 HSPs)
scaffold0191 (136-201)||(4538-4603)


Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 10 - 396
Target Start/End: Original strand, 34393827 - 34394206
Alignment:
Q  10 aataatatcataaggagccttaagaaaaccaaataataccaataagggttttgttaaccagtgtcctagtgtctcagacacgggttaagaaactaaaagt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||  |||||||||||||||||    
T  34393827 aataatatcataaggagccttaagaaaaccaaataataccaataagggttttgttaaccagtgtc--------tcagacactagttaagaaactaaaagt 34393918  T
Q  110 aaaaagcaaaaatatggttttatctcaacttttaaaaaatagaatacacaattttcaagaaaatatttccttttc-taattccttaatcagtgtcccgga 208  Q
    |||||| ||| |||||||||||| ||||||||||||||||||||||||||||||| || |||||||||| ||||| |||||||||||||||| |||||||    
T  34393919 aaaaagaaaagatatggttttatttcaacttttaaaaaatagaatacacaatttttaaaaaaatatttcattttcctaattccttaatcagtatcccgga 34394018  T
Q  209 gacaccatttaacatttttctaataataataataacatcaacaacaactaagctaacaaaggaaaccaacaacaatttggtactcataataagttgtgct 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34394019 gacaccatttaacatttttctaataataataataacatcaacaacaactaagctaacaaaggaaaccaacaacaatttggtactcataataagttgtgct 34394118  T
Q  309 ttnnnnnnnnncagacagaagctcaaagatgtcaccattggtcaaaattcacatggaattgcaaaggaattagggctacatttgttgg 396  Q
    ||         |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34394119 ttaaaaaaaaacagacagaagctcaaatatgtcaccattggtcaaaattcacatggaattgcaaaggaattagggctacatttgttgg 34394206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 134 - 197
Target Start/End: Complemental strand, 32143676 - 32143613
Alignment:
Q  134 tcaacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatc 197  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  32143676 tcaacttttaaaaaatagaatacacaattttcaagaaaatattttcttttctaattctttaatc 32143613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 136 - 225
Target Start/End: Original strand, 35470314 - 35470403
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtgtcccggagacaccatttaacattt 225  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||  ||||||||||| ||||| ||||||| ||||  |||||||||    
T  35470314 aacttttaaaacatagaatacacaattttcaaggaaatatttcctttaataattccttaaccagtgccccggaggcaccggttaacattt 35470403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 29108779 - 29108846
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtgtc 203  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  29108779 aacttttaaaaaatgaaatacacaattttcaagaaaatatttccttttataattccttaaccagtgtc 29108846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 15658861 - 15658789
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtgtcccgga 208  Q
    ||||||||||| |||||||||||||||| |||  |||||||||||||  ||||||||||||||||| ||||||    
T  15658861 aacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattccttaatcagtgccccgga 15658789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 144 - 195
Target Start/End: Complemental strand, 7645887 - 7645836
Alignment:
Q  144 aaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaa 195  Q
    ||||||| |||||||||||| |||||||||||||| |||| |||||||||||    
T  7645887 aaaaatataatacacaatttccaagaaaatatttcattttgtaattccttaa 7645836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 25749731 - 25749688
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttcc 179  Q
    |||||| ||||||||||||||||||||| |||||||||||||||    
T  25749731 aactttcaaaaaatagaatacacaatttccaagaaaatatttcc 25749688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 8186356 - 8186310
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttt 182  Q
    ||||||||||| ||| |||||||||||| ||||||||||||||||||    
T  8186356 aacttttaaaacataaaatacacaatttccaagaaaatatttccttt 8186310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 7461623 - 7461570
Alignment:
Q  149 tagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtgt 202  Q
    ||||||||| |||||||||| ||  |||||||||| ||||||||||||||||||    
T  7461623 tagaatacataattttcaaggaataatttccttttataattccttaatcagtgt 7461570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 33635753 - 33635700
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaatt 189  Q
    |||||||||||| ||||||||||||||| ||||| ||||||| ||||| |||||    
T  33635753 aacttttaaaaagtagaatacacaatttccaagacaatattttcttttataatt 33635700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 124
Target Start/End: Original strand, 45326664 - 45326703
Alignment:
Q  85 agacacgggttaagaaactaaaagtaaaaagcaaaaatat 124  Q
    |||||| |||||||||||||||||||||||| ||||||||    
T  45326664 agacactggttaagaaactaaaagtaaaaagaaaaaatat 45326703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 45716500 - 45716559
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaa 195  Q
    |||||| ||||| |||||| || ||||| ||||| ||||||||||||| |||||||||||    
T  45716500 aactttcaaaaagtagaatccataatttccaagacaatatttccttttataattccttaa 45716559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 170
Target Start/End: Original strand, 45326731 - 45326765
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaa 170  Q
    ||||||||||| |||||||||||||||||||||||    
T  45326731 aacttttaaaagatagaatacacaattttcaagaa 45326765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 209
Target Start/End: Complemental strand, 8329712 - 8329639
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtgtcccggag 209  Q
    |||||| ||||| ||||||||| ||||| ||| | ||||||||||| | |||||||||||  ||| ||||||||    
T  8329712 aactttcaaaaagtagaatacataatttccaaaataatatttccttatataattccttaacaagtatcccggag 8329639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 9620639 - 9620704
Alignment:
Q  139 ttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtgtcc 204  Q
    ||||||||| ||||||| |||||||| || || ||||||| |||| |||||||||||  |||||||    
T  9620639 ttttaaaaagtagaatatacaatttttaaaaatatatttctttttataattccttaacaagtgtcc 9620704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 177
Target Start/End: Original strand, 22348735 - 22348776
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatattt 177  Q
    ||||||||||| || |||| ||||||||||||||||||||||    
T  22348735 aacttttaaaatattgaatgcacaattttcaagaaaatattt 22348776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 195
Target Start/End: Original strand, 28580426 - 28580487
Alignment:
Q  134 tcaacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaa 195  Q
    ||||||||||||||||| ||||||||||||  |  ||||||||| ||||| |||||| ||||    
T  28580426 tcaacttttaaaaaataaaatacacaatttctataaaaatattttcttttataattctttaa 28580487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 225
Target Start/End: Original strand, 2128229 - 2128318
Alignment:
Q  134 tcaacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtgtcccggagacaccatttaacattt 225  Q
    ||||||||||||||| ||||||||  ||||   | |||| ||||||||||||||||| ||||  |||||||  ||| ||||| |||||||||    
T  2128229 tcaacttttaaaaaagagaataca--atttatgaaaaaacatttccttttctaattctttaactagtgtcctcgaggcaccagttaacattt 2128318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 29740762 - 29740718
Alignment:
Q  139 ttttaaaaaatagaatacacaattttcaagaaaatatttcctttt 183  Q
    ||||||||| || |||||||||||| | |||||||||||||||||    
T  29740762 ttttaaaaagtaaaatacacaatttcctagaaaatatttcctttt 29740718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 134 - 207
Target Start/End: Original strand, 8457551 - 8457624
Alignment:
Q  134 tcaacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtgtcccgg 207  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  8457551 tcaacttttaaaaaatagaatacacaatttccaagaaaatatttccttttctaattccttaatcagtggcccgg 8457624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 34127721 - 34127649
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaa-atatttccttttctaattccttaatcagtgtcccgg 207  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||| |||||    
T  34127721 aacttttaaaaaatagaatacacaatttccaagaaatatatttccttttctaattccttaaccagtgccccgg 34127649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 136 - 212
Target Start/End: Complemental strand, 44362351 - 44362275
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtgtcccggagaca 212  Q
    |||||| ||||||||||||||||||||||||| | |||||||| |||| ||||||||||| || || ||||||||||    
T  44362351 aactttcaaaaaatagaatacacaattttcaatacaatatttctttttataattccttaaccactgccccggagaca 44362275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 41646493 - 41646428
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtg 201  Q
    |||||||||||||||||||||||||||| ||||||| | ||||||| | ||||||||||| |||||    
T  41646493 aacttttaaaaaatagaatacacaatttgcaagaaattttttccttatttaattccttaaccagtg 41646428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 136 - 198
Target Start/End: Complemental strand, 16938959 - 16938897
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatca 198  Q
    |||||| ||||| ||||||||||||||||||||| | |||||||| || ||||||||||||||    
T  16938959 aactttaaaaaagtagaatacacaattttcaagacactatttcctcttataattccttaatca 16938897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 30157744 - 30157793
Alignment:
Q  134 tcaacttttaaaaaatagaatacacaattttcaagaaaatatttcctttt 183  Q
    |||||||| ||||| ||||||||||||||| |||||||||||||||||||    
T  30157744 tcaactttcaaaaagtagaatacacaatttccaagaaaatatttcctttt 30157793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 30362881 - 30362828
Alignment:
Q  134 tcaacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaa 187  Q
    ||||||||| ||||||| |||||||||||||||| |||||||||| ||||||||    
T  30362881 tcaactttttaaaaataaaatacacaattttcaaaaaaatatttctttttctaa 30362828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 7662310 - 7662374
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagt 200  Q
    ||||||||||| |||||||||||||||| ||| ||||||||||||||  ||||| ||||| ||||    
T  7662310 aacttttaaaatatagaatacacaatttccaaaaaaatatttcctttaataatttcttaaccagt 7662374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 27924543 - 27924484
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaa 195  Q
    |||||| ||||| ||||||||| ||||||||||| ||||||| |||||||||||| ||||    
T  27924543 aactttcaaaaagtagaatacataattttcaagataatattttcttttctaattctttaa 27924484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 42563253 - 42563194
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaa 195  Q
    |||||| |||||||||||| || ||||||||| | ||||||||||||| |||||||||||    
T  42563253 aactttcaaaaaatagaatgcagaattttcaatacaatatttccttttataattccttaa 42563194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 18087247 - 18087293
Alignment:
Q  137 acttttaaaaaatagaatacacaattttcaagaaaatatttcctttt 183  Q
    ||||| ||||| ||||||||||||||||||||| |||||||||||||    
T  18087247 actttcaaaaagtagaatacacaattttcaagagaatatttcctttt 18087293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 40891961 - 40891900
Alignment:
Q  134 tcaacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaa 195  Q
    |||| ||| |||||||| ||||||||||| |||| ||||||||| ||||| |||||||||||    
T  40891961 tcaagtttcaaaaaataaaatacacaattatcaaaaaaatattttcttttataattccttaa 40891900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 45114747 - 45114687
Alignment:
Q  135 caacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaa 195  Q
    |||||||||||| ||||| |||||||||||||| |||| ||||| |||| |||||| ||||    
T  45114747 caacttttaaaacatagactacacaattttcaaaaaaaaatttcattttataattctttaa 45114687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 4366322 - 4366381
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaa 195  Q
    |||||||||||| ||||||||| ||||||||| | |||||||| |||| | |||||||||    
T  4366322 aacttttaaaaagtagaatacataattttcaaaataatatttcattttatgattccttaa 4366381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 23722305 - 23722251
Alignment:
Q  171 aatatttccttttctaattccttaatcagtgtcccggagacaccatttaacattt 225  Q
    ||||||||||||||||||||||||| ||||| ||||| | ||||  |||||||||    
T  23722305 aatatttccttttctaattccttaaccagtgccccgggggcaccggttaacattt 23722251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 200
Target Start/End: Original strand, 13015434 - 13015491
Alignment:
Q  143 aaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagt 200  Q
    ||||| ||||||||||||||| ||| | ||||||| ||||| ||||| ||||||||||    
T  13015434 aaaaagtagaatacacaatttgcaatacaatatttacttttataatttcttaatcagt 13015491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 30157849 - 30157893
Alignment:
Q  151 gaatacacaattttcaagaaaatatttccttttctaattccttaa 195  Q
    ||||| ||||||||||||||||||||||||||  |||||| ||||    
T  30157849 gaatatacaattttcaagaaaatatttcctttaataattcattaa 30157893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 49081305 - 49081370
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtg 201  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  49081305 aacttttaaaaaatagaatacacaattttcaaaaaaatatttccttttctaattctttaatcagtg 49081370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 134 - 225
Target Start/End: Original strand, 42274337 - 42274427
Alignment:
Q  134 tcaacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtgtcccggagacaccatttaacattt 225  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||| || || |||| |||||||  |||||||||    
T  42274337 tcaacttttaaaaaatagaacacacaattttcaaaaaaatatttccttttctaattacttaaccaatg-cccgaagacacctgttaacattt 42274427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 1051849 - 1051784
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtg 201  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||  |||||||||||||||||    
T  1051849 aacttttaaaacatagaatacacaattttcaaggaaatatttcctttaataattccttaatcagtg 1051784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 136 - 231
Target Start/End: Original strand, 7633185 - 7633279
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtgtcccggagacaccatttaacatttttctaa 231  Q
    ||||||||||| |||||||||||||||||||| |||  |||||||||| ||||||||||| ||||  ||||||| ||||  ||||||||| |||||    
T  7633185 aacttttaaaatatagaatacacaattttcaaaaaatcatttccttttataattccttaaccagtcccccggag-caccggttaacatttctctaa 7633279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 26194602 - 26194523
Alignment:
Q  134 tcaacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtgtcccggagacac 213  Q
    |||| ||||||||| | ||||||||||||| ||||| |||||||| |||| |||||||||||  |||| |||||||||||    
T  26194602 tcaatttttaaaaagttgaatacacaatttacaagataatatttcattttataattccttaacaagtgccccggagacac 26194523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 201
Target Start/End: Complemental strand, 47089274 - 47089207
Alignment:
Q  134 tcaacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtg 201  Q
    |||| ||| ||||| || ||||||||||||||||||||| |||||||||| ||||||||||| |||||    
T  47089274 tcaagtttcaaaaagtaaaatacacaattttcaagaaaacatttccttttataattccttaaccagtg 47089207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 134 - 195
Target Start/End: Original strand, 37858443 - 37858505
Alignment:
Q  134 tcaacttttaaaaaatagaatacacaattttc-aagaaaatatttccttttctaattccttaa 195  Q
    |||||||||| ||||||||||||||||||| | || |||||||||| ||||||||||||||||    
T  37858443 tcaacttttataaaatagaatacacaatttccaaaaaaaatatttcattttctaattccttaa 37858505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 53374995 - 53375044
Alignment:
Q  134 tcaacttttaaaaaatagaatacacaattttcaagaaaatatttcctttt 183  Q
    |||||||||||||| ||||||||||||||| ||||| |||||||||||||    
T  53374995 tcaacttttaaaaagtagaatacacaatttccaagagaatatttcctttt 53375044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 32056314 - 32056382
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtgtcc 204  Q
    |||||||||||| || |||||||||||||||||| || |||||||||| ||||| ||||| || |||||    
T  32056314 aacttttaaaaagtaaaatacacaattttcaagacaaaatttccttttataatttcttaaccaatgtcc 32056382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 38609151 - 38609087
Alignment:
Q  143 aaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtgtcccgg 207  Q
    ||||| || |||||||||||||| |||||| |||||||||| ||||||||||| ||||| |||||    
T  38609151 aaaaagtaaaatacacaattttcgagaaaacatttccttttataattccttaaccagtgccccgg 38609087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 3168456 - 3168397
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaa 195  Q
    ||||||||||| ||||||||||||||||| ||  |||||||||||||  |||||||||||    
T  3168456 aacttttaaaacatagaatacacaatttttaaagaaatatttcctttaataattccttaa 3168397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 33033249 - 33033313
Alignment:
Q  138 cttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtgtc 203  Q
    |||||||||  ||||||||||||||| ||||||||||||| ||||| ||||| | |||||||||||    
T  33033249 cttttaaaacttagaatacacaatttccaagaaaatattttcttttataatt-cataatcagtgtc 33033313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 47742794 - 47742862
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtgtcc 204  Q
    |||||||||||  || ||||||||| || ||||| ||||||||||||| ||||||||||| || |||||    
T  47742794 aacttttaaaatgtataatacacaaattccaagataatatttccttttataattccttaaccaatgtcc 47742862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 36619931 - 36619990
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaa 195  Q
    |||||||||||| || |||||||||||| ||| | ||||||||||||| |||| ||||||    
T  36619931 aacttttaaaaagtaaaatacacaatttccaatacaatatttccttttataatcccttaa 36619990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 1646623 - 1646669
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttt 182  Q
    ||||||||||| ||| ||||||||||||||||  |||||||||||||    
T  1646623 aacttttaaaacataaaatacacaattttcaaagaaatatttccttt 1646669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 47750531 - 47750470
Alignment:
Q  134 tcaacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaa 195  Q
    |||| ||| ||||| || |||||||||||||  ||||||||||||| ||| |||||||||||    
T  47750531 tcaagtttcaaaaagtaaaatacacaatttttgagaaaatatttccctttataattccttaa 47750470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 12763429 - 12763493
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagt 200  Q
    |||||| ||||| ||||||||||| ||| ||| | ||||||| ||||| ||||||||||| ||||    
T  12763429 aactttcaaaaagtagaatacacagtttccaaaacaatattttcttttataattccttaaccagt 12763493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 30198382 - 30198321
Alignment:
Q  134 tcaacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaa 195  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  30198382 tcaacttttaaaaaatagaatacacaatttctaagaaaatatttccttttctaattccttaa 30198321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 134 - 193
Target Start/End: Complemental strand, 22342369 - 22342310
Alignment:
Q  134 tcaacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattcctt 193  Q
    ||||||||||||| |||||||| |||||||||| |||||||||| |||||||||||||||    
T  22342369 tcaacttttaaaacatagaatagacaattttcatgaaaatattttcttttctaattcctt 22342310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 8919445 - 8919379
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtgt 202  Q
    ||||||||||| |||||||| ||||||||||| |||  |||||||||| ||||||||||| ||||||    
T  8919445 aacttttaaaatatagaatatacaattttcaaaaaatcatttccttttataattccttaaccagtgt 8919379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 212
Target Start/End: Complemental strand, 9047157 - 9047081
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtgtcccggagaca 212  Q
    |||||| ||||| |||||| |||||||||||| | || |||||||||| | ||||||||| ||||||||||| ||||    
T  9047157 aactttcaaaaagtagaatccacaattttcaatacaaaatttccttttatgattccttaaccagtgtcccggggaca 9047081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 30898099 - 30898158
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaa 195  Q
    |||||| ||||| ||||||  ||| ||||||||||||||||||||||| |||||||||||    
T  30898099 aactttcaaaaagtagaatgtacagttttcaagaaaatatttccttttataattccttaa 30898158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 6221098 - 6221168
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtgtcccg 206  Q
    |||||| ||||| ||||||| ||||||| ||||| ||||| ||||||| ||||||||||| ||||| ||||    
T  6221098 aactttcaaaaagtagaatatacaatttccaagacaatatctccttttataattccttaaccagtgccccg 6221168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 134 - 203
Target Start/End: Original strand, 25790125 - 25790194
Alignment:
Q  134 tcaacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtgtc 203  Q
    |||||||| ||||| |||| || |||||||  |||||||||||| ||||| ||||| |||||||||||||    
T  25790125 tcaactttaaaaaattagagtatacaatttctaagaaaatattttcttttataatttcttaatcagtgtc 25790194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 134 - 195
Target Start/End: Original strand, 34224320 - 34224381
Alignment:
Q  134 tcaacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaa 195  Q
    |||||||| ||||| ||||||| ||||||||||||| |||| |||| ||| |||||||||||    
T  34224320 tcaactttgaaaaagtagaatatacaattttcaagagaataattccatttataattccttaa 34224381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 45879172 - 45879115
Alignment:
Q  138 cttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaa 195  Q
    |||| ||||| ||||||||||||||| ||||| || |||||||||| |||||||||||    
T  45879172 ctttcaaaaagtagaatacacaatttccaagacaaaatttccttttataattccttaa 45879115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 40417689 - 40417748
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaa 195  Q
    |||||| ||||||||||| ||||||||| ||| | ||||||| ||||| |||||||||||    
T  40417689 aactttcaaaaaatagaaaacacaatttccaaaacaatattttcttttataattccttaa 40417748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 236
Target Start/End: Original strand, 24495335 - 24495417
Alignment:
Q  154 tacacaattttcaagaaaatatttccttttctaattccttaatcagtgtcccggagacaccatttaacatttttctaataata 236  Q
    |||||||||||||||| ||||||| ||||| |||||| ||||  |||| | |||||| ||   ||||||||| ||||||||||    
T  24495335 tacacaattttcaagataatattttcttttataattctttaacaagtgcctcggagatacttgttaacatttctctaataata 24495417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 231
Target Start/End: Original strand, 41999350 - 41999424
Alignment:
Q  157 acaattttcaagaaaatatttccttttctaattccttaatcagtgtcccggagacaccatttaacatttttctaa 231  Q
    |||||||| |||||||||||||  ||| |||||||||||||||| ||   | ||||| | |||||||||||||||    
T  41999350 acaattttaaagaaaatatttctgtttataattccttaatcagtctctaagggacactagttaacatttttctaa 41999424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 37677416 - 37677366
Alignment:
Q  134 tcaacttttaaaaaatagaatacacaattttcaagaaaatatttccttttc 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37677416 tcaacttttaaaaaatagaatacacaattttcaagaaaatatttccttttc 37677366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 40892855 - 40892801
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattc 190  Q
    |||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||    
T  40892855 aactttcaaaaagtagaatacacaatttccaagaaaatatttccttttataattc 40892801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 195
Target Start/End: Original strand, 27659758 - 27659819
Alignment:
Q  134 tcaacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaa 195  Q
    |||||||| ||||||||||||||||||||||||| ||| |||||| |||| |||||| ||||    
T  27659758 tcaactttcaaaaaatagaatacacaattttcaaaaaattatttcattttataattcattaa 27659819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 34664326 - 34664266
Alignment:
Q  134 tcaacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattcctta 194  Q
    |||||||||||||||||||||||| ||||| ||| |||||||||||| || ||||| ||||    
T  34664326 tcaacttttaaaaaatagaatacataatttccaataaaatatttcctattataatttctta 34664266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 200
Target Start/End: Complemental strand, 32600713 - 32600647
Alignment:
Q  134 tcaacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagt 200  Q
    ||||||||||||| |||||||||||||||||||||||  | ||| ||||| ||| ||||||| ||||    
T  32600713 tcaacttttaaaatatagaatacacaattttcaagaattttttttcttttttaactccttaaccagt 32600647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 225
Target Start/End: Original strand, 55142353 - 55142435
Alignment:
Q  143 aaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtgtcccggagacaccatttaacattt 225  Q
    |||| |||||||||||||||| ||| ||||||||| ||||| |||||| |||| |||| | |||| ||||||  |||||||||    
T  55142353 aaaacatagaatacacaatttccaaaaaaatattttcttttataattctttaaccagtattccggggacaccggttaacattt 55142435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 191
Target Start/End: Complemental strand, 7230683 - 7230635
Alignment:
Q  143 aaaaaatagaatacacaattttcaagaaaatatttccttttctaattcc 191  Q
    |||||||| |||||||| |||| |||||||||||||||||| |||||||    
T  7230683 aaaaaatataatacacattttttaagaaaatatttccttttttaattcc 7230635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 28233519 - 28233463
Alignment:
Q  139 ttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaa 195  Q
    ||||||||| ||||||| ||||||||||||| | ||||||||||| |||||| ||||    
T  28233519 ttttaaaaagtagaataaacaattttcaagatagtatttccttttataattcgttaa 28233463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 53653171 - 53653103
Alignment:
Q  140 tttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtgtcccgga 208  Q
    |||||||| ||||||||||||||||||| | || |||| ||||| |||||| |||| ||||| ||||||    
T  53653171 tttaaaaagtagaatacacaattttcaatataaaattttcttttataattctttaaccagtgccccgga 53653103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 4275542 - 4275483
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaa 195  Q
    ||||||||||| ||||||||||||||||||||| ||   |||||| || |||||||||||    
T  4275542 aacttttaaaacatagaatacacaattttcaaggaatcgtttcctcttataattccttaa 4275483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 14750396 - 14750337
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaa 195  Q
    ||||||||||| |||||||||||||||| |||| ||  ||||||| || |||||||||||    
T  14750396 aacttttaaaatatagaatacacaatttccaaggaatcatttcctcttataattccttaa 14750337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 134 - 209
Target Start/End: Original strand, 31064572 - 31064647
Alignment:
Q  134 tcaacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtgtcccggag 209  Q
    |||| ||| ||||| || |||||||||||||||| ||||| |||| |||| |||||||||||  ||||||| ||||    
T  31064572 tcaagtttcaaaaagtaaaatacacaattttcaaaaaaatgtttctttttataattccttaactagtgtccgggag 31064647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 31316061 - 31316006
Alignment:
Q  134 tcaacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaatt 189  Q
    |||| |||||||||||| | |||||||||||||  ||||||||||||||| |||||    
T  31316061 tcaaattttaaaaaataaagtacacaattttcataaaaatatttccttttataatt 31316006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 38833017 - 38832958
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaa 195  Q
    |||||| ||||| ||||||||| ||||||||| | ||||||||||||| ||||| |||||    
T  38833017 aactttcaaaaagtagaatacataattttcaatacaatatttccttttataatttcttaa 38832958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 134 - 201
Target Start/End: Complemental strand, 39149196 - 39149129
Alignment:
Q  134 tcaacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtg 201  Q
    ||||||||||||||||||||||||||||||  || |||| |  | |||||||||||||| || |||||    
T  39149196 tcaacttttaaaaaatagaatacacaatttctaaaaaaaaaaattcttttctaattcctcaaccagtg 39149129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 198
Target Start/End: Original strand, 9099178 - 9099240
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatca 198  Q
    |||||| ||||| | |||||||| |||| ||| | ||||||||||||| ||||||||||||||    
T  9099178 aactttcaaaaagttgaatacacgatttccaatacaatatttccttttataattccttaatca 9099240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 195
Target Start/End: Complemental strand, 49980362 - 49980316
Alignment:
Q  149 tagaatacacaattttcaagaaaatatttccttttctaattccttaa 195  Q
    ||||||||||||||| ||||| ||||||||||||  |||||||||||    
T  49980362 tagaatacacaatttccaagataatatttcctttcataattccttaa 49980316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 6876286 - 6876241
Alignment:
Q  149 tagaatacacaattttcaagaaaatatttccttttctaattcctta 194  Q
    ||||||||||||||||||||| || ||||| |||| ||||||||||    
T  6876286 tagaatacacaattttcaagacaaaatttcattttataattcctta 6876241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 163
Target Start/End: Original strand, 34723053 - 34723082
Alignment:
Q  134 tcaacttttaaaaaatagaatacacaattt 163  Q
    ||||||||||||||||||||||||||||||    
T  34723053 tcaacttttaaaaaatagaatacacaattt 34723082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 46598281 - 46598216
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtg 201  Q
    ||||| |||||||||||||||| || |||||||||||||||| ||||  |||||||||||||||||    
T  46598281 aacttgtaaaaaatagaatacataactttcaagaaaatattttctttcttaattccttaatcagtg 46598216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 143 - 195
Target Start/End: Original strand, 43638401 - 43638453
Alignment:
Q  143 aaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaa 195  Q
    ||||| ||||||||||||||||||||| ||||||||||||| |||||||||||    
T  43638401 aaaaagtagaatacacaattttcaagacaatatttccttttataattccttaa 43638453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 964015 - 963944
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtgtcccgg 207  Q
    |||||| ||||| ||||||||||||||| ||||| |||||||||| || |||||||||||  ||||||||||    
T  964015 aactttgaaaaagtagaatacacaatttccaagacaatatttcctattataattccttaacaagtgtcccgg 963944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 6395526 - 6395467
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaa 195  Q
    ||||||||||| ||| |||||||||||||||| ||||||||| ||||  |||||||||||    
T  6395526 aacttttaaaacataaaatacacaattttcaaaaaaatattttctttaataattccttaa 6395467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 42888036 - 42887974
Alignment:
Q  134 tcaacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaat 196  Q
    |||| ||| ||||| || |||||| ||||||||||||||||||||||||| |||||| |||||    
T  42888036 tcaagtttgaaaaagtaaaatacataattttcaagaaaatatttccttttataattctttaat 42887974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 19998591 - 19998650
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaa 195  Q
    ||||||||||| ||||||||||||||||||||  || ||||| ||||| | |||||||||    
T  19998591 aacttttaaaatatagaatacacaattttcaaagaattattttcttttatgattccttaa 19998650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 27919167 - 27919208
Alignment:
Q  154 tacacaattttcaagaaaatatttccttttctaattccttaa 195  Q
    |||| ||||||||||||||||||||||||| |||||| ||||    
T  27919167 tacataattttcaagaaaatatttccttttataattctttaa 27919208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 49372566 - 49372618
Alignment:
Q  143 aaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaat 196  Q
    |||||||| ||||| |||||||||| ||||||||| ||||| ||||||||||||    
T  49372566 aaaaaataaaatacccaattttcaa-aaaatattttcttttataattccttaat 49372618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 35539016 - 35538948
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtgtcc 204  Q
    ||||||||||||||| |||||||| ||| ||| | |||||||| |||| ||||| |||||  |||||||    
T  35539016 aacttttaaaaaataaaatacacagtttccaaaacaatatttcattttataatttcttaacaagtgtcc 35538948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 7017 - 6933
Alignment:
Q  141 ttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtgtcccggagacaccatttaacattt 225  Q
    |||||| ||||||||||||||||||||||||  ||||||||||  ||||||||||  |||||||||||  ||||  |||||||||    
T  7017 ttaaaacatagaatacacaattttcaagaaatcatttccttttacaattccttaactagtgtcccggaatcaccggttaacattt 6933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 7144 - 7097
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttcctttt 183  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||    
T  7144 aacttttaaaatatagaatacacaattttcaagaaattatttcctttt 7097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 136 - 225
Target Start/End: Complemental strand, 8052270 - 8052180
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtg-tcccggagacaccatttaacattt 225  Q
    ||||||||||| |||||||||||||||| |||| ||  |||||||||| ||||| |||||||||||  ||||| ||||||  |||||||||    
T  8052270 aacttttaaaacatagaatacacaatttccaaggaataatttccttttataatttcttaatcagtgaccccggggacaccggttaacattt 8052180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 225
Target Start/End: Original strand, 19742140 - 19742224
Alignment:
Q  140 tttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtgtcccggagacaccatttaacattt 225  Q
    ||||||| ||||||||| ||||||  ||||||||||||| |||||||| | ||||||||||| ||||||| ||||  |||||||||    
T  19742140 tttaaaagatagaatactcaatttctaagaaaatatttcattttctaactgcttaatcagtg-cccggaggcaccggttaacattt 19742224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 31330581 - 31330516
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtg 201  Q
    |||||| ||||| ||||||||||||||||||||| || ||||||| || |||||| ||||||||||    
T  31330581 aactttcaaaaagtagaatacacaattttcaagacaaaatttcctcttataattctttaatcagtg 31330516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 212
Target Start/End: Complemental strand, 29608511 - 29608435
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtgtcccggagaca 212  Q
    |||||||||||||||||||||| ||||| ||| || |||||||||||| ||||| |||||  ||||||  |||||||    
T  29608511 aacttttaaaaaatagaatacataatttccaaaaatatatttccttttttaatttcttaacaagtgtctaggagaca 29608435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 31955717 - 31955638
Alignment:
Q  134 tcaacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtgtcccggagacac 213  Q
    |||| ||| ||||| || ||||||||||||||||  |||||||||||||| |||||  |||| |||||||||| ||||||    
T  31955717 tcaagtttcaaaaagtaaaatacacaattttcaaataaatatttccttttataatttattaaccagtgtcccgcagacac 31955638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 2656478 - 2656420
Alignment:
Q  149 tagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtgtcccgg 207  Q
    ||||||||||||||| ||| | ||||||| ||||| ||||||||||| |||||||||||    
T  2656478 tagaatacacaatttccaatataatattttcttttataattccttaaccagtgtcccgg 2656420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 134 - 203
Target Start/End: Original strand, 21608205 - 21608274
Alignment:
Q  134 tcaacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtgtc 203  Q
    |||| ||||||||| || ||||||||||||| ||||||| |||| ||||| ||||| ||||| |||||||    
T  21608205 tcaaattttaaaaagtaaaatacacaattttgaagaaaaaattttcttttataatttcttaaccagtgtc 21608274  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 30533714 - 30533768
Alignment:
Q  134 tcaacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaat 188  Q
    |||||||| ||||| ||||||||||||||||||||  || |||||||||| ||||    
T  30533714 tcaactttcaaaaagtagaatacacaattttcaagttaacatttccttttataat 30533768  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 6030953 - 6030997
Alignment:
Q  139 ttttaaaaaatagaatacacaattttcaagaaaatatttcctttt 183  Q
    |||||||||  | ||||||||||||| ||||||||||||||||||    
T  6030953 ttttaaaaagaataatacacaatttttaagaaaatatttcctttt 6030997  T

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Target: scaffold0007 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 185507 - 185567
Alignment:
Q  143 aaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtgtc 203  Q
    ||||| ||||||||||||||||||| | ||||||| ||||| ||||||||||| |||||||    
T  185507 aaaaagtagaatacacaattttcaatacaatattttcttttataattccttaaccagtgtc 185567  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 19366807 - 19366867
Alignment:
Q  134 tcaacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattcctta 194  Q
    |||||||| ||||| ||||||||||||||| ||||| ||| ||||||||| ||||||||||    
T  19366807 tcaactttcaaaaagtagaatacacaatttccaagacaatgtttccttttataattcctta 19366867  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 24181507 - 24181449
Alignment:
Q  143 aaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtg 201  Q
    ||||| || |||||||||||||||| | ||||||||||||| ||||||||||| |||||    
T  24181507 aaaaagtaaaatacacaattttcaatacaatatttccttttataattccttaaccagtg 24181449  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 33054122 - 33054184
Alignment:
Q  139 ttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtg 201  Q
    |||| ||| ||||||||||||||||| ||||||||||||| |||  ||||| |||||||||||    
T  33054122 ttttcaaatatagaatacacaattttaaagaaaatatttcttttaataatttcttaatcagtg 33054184  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 41868831 - 41868889
Alignment:
Q  134 tcaacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattcct 192  Q
    |||||||||||||| || ||||||||||||  |||| ||||||||||||| ||||||||    
T  41868831 tcaacttttaaaaagtaaaatacacaatttctaagataatatttccttttataattcct 41868889  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 7313276 - 7313317
Alignment:
Q  153 atacacaattttcaagaaaatatttccttttctaattcctta 194  Q
    |||||||||||||||||||||||||| |||| ||||||||||    
T  7313276 atacacaattttcaagaaaatatttctttttataattcctta 7313317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 15966868 - 15966819
Alignment:
Q  160 attttcaagaaaatatttccttttctaattccttaatcagtgtcccggag 209  Q
    |||| ||| ||||||||||||||||||||||||||| | |||||||||||    
T  15966868 atttgcaaaaaaatatttccttttctaattccttaaccggtgtcccggag 15966819  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 19336835 - 19336906
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtgtcccgga 208  Q
    |||||| ||||| |||||||||||||||| ||||||||| ||| |||| ||||| |||||  |||||||||||    
T  19336835 aactttcaaaaagtagaatacacaatttttaagaaaata-ttcattttataatttcttaacaagtgtcccgga 19336906  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 35457375 - 35457331
Alignment:
Q  160 attttcaagaaaatatttccttttctaattccttaatcagtgtcc 204  Q
    |||||||||||||||||||||||  |||||||||||| |||||||    
T  35457375 attttcaagaaaatatttcctttaataattccttaataagtgtcc 35457331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 9922953 - 9923012
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaa 195  Q
    ||||||||||| ||| ||||||||||||||||  |||||||| ||||  |||||||||||    
T  9922953 aacttttaaaacatataatacacaattttcaaagaaatattttctttaataattccttaa 9923012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 14148323 - 14148382
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaa 195  Q
    |||||| ||||| ||||||||||||||| ||||| ||||| || |||| |||||||||||    
T  14148323 aactttcaaaaagtagaatacacaatttccaagataatatgtctttttataattccttaa 14148382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 26440145 - 26440086
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaa 195  Q
    |||||||||||| |||||||||||||||  || || ||||||| |||| |||||||||||    
T  26440145 aacttttaaaaagtagaatacacaatttctaaaaagatatttcattttataattccttaa 26440086  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 26296444 - 26296502
Alignment:
Q  143 aaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtg 201  Q
    ||||| ||||||||||||||| ||| | ||||||||||||| |||||| |||| |||||    
T  26296444 aaaaagtagaatacacaatttccaatacaatatttccttttataattctttaaccagtg 26296502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 29144385 - 29144435
Alignment:
Q  145 aaaatagaatacacaattttcaagaaaatatttccttttctaattccttaa 195  Q
    |||||| |||||||||||| ||| ||||||||||||||| ||||| |||||    
T  29144385 aaaataaaatacacaatttccaaaaaaatatttccttttataatttcttaa 29144435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 5412005 - 5412062
Alignment:
Q  139 ttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaat 196  Q
    ||||||||| || |||||||||||||| | ||||||||| |||||  |||||||||||    
T  5412005 ttttaaaaagtaaaatacacaattttcgaaaaaatattttcttttagaattccttaat 5412062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 183
Target Start/End: Original strand, 22732006 - 22732035
Alignment:
Q  154 tacacaattttcaagaaaatatttcctttt 183  Q
    ||||||||||||||||||||||||||||||    
T  22732006 tacacaattttcaagaaaatatttcctttt 22732035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 195
Target Start/End: Original strand, 5471543 - 5471595
Alignment:
Q  143 aaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaa 195  Q
    ||||| |||||||||||||||| |||| ||||||| ||||| |||||| ||||    
T  5471543 aaaaagtagaatacacaatttttaagataatattttcttttataattctttaa 5471595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 10979937 - 10979977
Alignment:
Q  216 tttaacatttttctaataataataataacatcaacaacaac 256  Q
    |||||||||| ||||||||||||||||| | ||||||||||    
T  10979937 tttaacatttctctaataataataataataacaacaacaac 10979977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 140312 - 140371
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaa 195  Q
    |||||| ||||||||||||||| ||||||||||| || ||||| |||| |||||||||||    
T  140312 aactttcaaaaaatagaatacataattttcaagataaaatttcattttataattccttaa 140371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0735 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0735
Description:

Target: scaffold0735; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 989 - 927
Alignment:
Q  134 tcaacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaat 196  Q
    |||| ||| ||||| || |||||| ||||||||||||||||||||||||| |||||| |||||    
T  989 tcaagtttgaaaaagtaaaatacataattttcaagaaaatatttccttttataattctttaat 927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 134 - 197
Target Start/End: Complemental strand, 18887 - 18824
Alignment:
Q  134 tcaacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatc 197  Q
    |||||||| ||||| ||||||||| ||||||||||| |||||| || ||| || ||||||||||    
T  18887 tcaactttcaaaaagtagaatacataattttcaagacaatattcccgtttatatttccttaatc 18824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1095 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1095
Description:

Target: scaffold1095; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 205
Target Start/End: Original strand, 923 - 992
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtgtccc 205  Q
    |||||| ||| | |||| ||||| |||||||| | || |||||||||| |||||||||||||| ||||||    
T  923 aactttcaaacagtagactacaccattttcaaaacaaaatttccttttataattccttaatcactgtccc 992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 4603 - 4538
Alignment:
Q  136 aacttttaaaaaatagaatacacaattttcaagaaaatatttccttttctaattccttaatcagtg 201  Q
    |||||| ||||| | ||||||||||||||||| | |||||||| |||| | |||| ||||||||||    
T  4603 aactttcaaaaagtggaatacacaattttcaatacaatatttcattttattattctttaatcagtg 4538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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