View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15395_low_17 (Length: 390)
Name: NF15395_low_17
Description: NF15395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15395_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 34770440 - 34770166
Alignment:
| Q |
1 |
aactaatatgaattgtcatgaaaatagggttttatgttgagagacacttgtatattattatagatagagtgaacaatataatagagaacacatcatcctt |
100 |
Q |
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| T |
34770440 |
aactaatatgaattgtcatgaaaatagggttttatgttgagagacacttgtatattattatagatagagtaaacaatataatagagaacacatcatcctt |
34770341 |
T |
|
| Q |
101 |
agacatgtatttccaaggcaaaaaggaaagaatgtgattagatttgatcgttataatgatagactccagtgatttcaattctcctttttgagtgcttatt |
200 |
Q |
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| T |
34770340 |
agacatgtatttccaaggcaaaaaggaaagaatgtgatttggtttgatcgttataatgatagactctagtgatttcaattctcctttttgagtgcttatt |
34770241 |
T |
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| Q |
201 |
ttcaaaacgaatattaaatcatctttctatcatcttacatcttttatttaaaacaacaatgtctattattttgcatatttaggaag |
286 |
Q |
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| T |
34770240 |
ttcaaaactaatattaaatca-----------tcttacatcttttatttaaaacaacaatatctattattttgcatatttaggaag |
34770166 |
T |
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Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 22676449 - 22676505
Alignment:
| Q |
199 |
ttttcaaaacgaatattaaatcatctttctatcatcttacatcttttatttaaaaca |
255 |
Q |
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| T |
22676449 |
ttttcaaaacaaatattaaatcgtctttcaatcatcttgcatcttttattaaaaaca |
22676505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 349
Target Start/End: Complemental strand, 18609889 - 18609837
Alignment:
| Q |
297 |
accttgatgattacaagtccttgtgggatcaatattttattacaataataaaa |
349 |
Q |
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||||||||||| | |||||| |||||||||||||||||||||| | ||||||| |
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| T |
18609889 |
accttgatgatcataagtccctgtgggatcaatattttattacgacaataaaa |
18609837 |
T |
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