View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15395_low_18 (Length: 388)
Name: NF15395_low_18
Description: NF15395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15395_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 5 - 371
Target Start/End: Original strand, 49271669 - 49272035
Alignment:
| Q |
5 |
aggagcacagagaacaccaggaacagagggacagaacttaaagctatatatctcataagcatgttcacctgcaagcctctcaattttgaacttgctaaca |
104 |
Q |
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| T |
49271669 |
aggagcacaaagaacaccaggaacagagggacagaacttaaagctatatatctcataagcatgttcacctgcaagcctctcaatcttgaacttgctaaca |
49271768 |
T |
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| Q |
105 |
agatccccagctgtaccaccagtgctcacaaaccaaaacccagacccaacctttaaaagcctccacacttttggttcattgcaaggactacccagaatag |
204 |
Q |
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| T |
49271769 |
agatccccagctgcaccaccagtgctcacaaaccaaaacccagacccaacctttaaaagcctccacacttttggttcattgcaaggactacccagaatag |
49271868 |
T |
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| Q |
205 |
gaatctcaatggtgaggtcagtgagagttggaatgtaatcaagacctgatgcagagaaatacaccggtgtgccgattgcatcagggttacggattacatc |
304 |
Q |
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| T |
49271869 |
gaatctcaatggtgaggtcagtgagagttggaatgtaatcaagacctgatgcagagaaatacaccggtgtgccgattgcatcagggttacggattacatc |
49271968 |
T |
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| Q |
305 |
aagagggcatgttttgtttcttgtatgtcctaatgtaatgcctccattgtcggcccaaagtggaaat |
371 |
Q |
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| T |
49271969 |
aagagggcatgttttgtttcttgtgtgtcctaatgtaatgcctccattgtcggcccaaagtggaaat |
49272035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 5 - 371
Target Start/End: Original strand, 49277586 - 49277958
Alignment:
| Q |
5 |
aggagcacagagaacaccaggaacagagggacagaacttaaagctatatatctcataagcatgttcacctgcaagcctctcaattttgaacttgctaaca |
104 |
Q |
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| T |
49277586 |
aggagcacaaagagtaccaggaacagaaggacagtacagaaagctataaatctcataagcatgttctccctcaagcctctcaatcttaaactggctaaaa |
49277685 |
T |
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| Q |
105 |
agatccccagctgtaccaccagtgctcacaaaccaaaacccagacccaa------cctttaaaagcctccacacttttggttcattgcaaggactaccca |
198 |
Q |
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| T |
49277686 |
aggttcccaggaaaaccaccggtgctcacaaaccaaaacctagctctagttccctcttttgaaatcttccacacttttctctcactgcaaggactaccca |
49277785 |
T |
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| Q |
199 |
gaataggaatctcaatggtgaggtcagtgagagttggaatgtaatcaagacctgatgcagagaaatacaccggtgtgccgattgcatcagggttacggat |
298 |
Q |
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| T |
49277786 |
atattggaatctcaacggtgagatcagtgagagttggaatgtaatcatgttcatattcatagaaataaactggcgagccaatggcttcagggttacggat |
49277885 |
T |
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| Q |
299 |
tacatcaagagggcatgttttgtttcttgtatgtcctaatgtaatgcctccattgtcggcccaaagtggaaat |
371 |
Q |
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| T |
49277886 |
aacatcaagagggcatgttttgtttcttgtttgtcctaatgttatgcctccattgtcagcccaaagtggaaat |
49277958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 76 - 328
Target Start/End: Original strand, 49269292 - 49269544
Alignment:
| Q |
76 |
caagcctctcaattttgaacttgctaacaagatccccagctgtaccaccagtgctcacaaaccaaaacccagacccaacctttaaaagcctccacacttt |
175 |
Q |
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| T |
49269292 |
caagcttctcaatcttgaacttactaacaacatccccagctacaccaccagtgctcaaaaaccagaacccagatccctcttttgaaagcttcaacacttt |
49269391 |
T |
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| Q |
176 |
tggttcattgcaaggactacccagaataggaatctcaatggtgaggtcagtgagagttggaatgtaatcaagacctgatgcagagaaatacaccggtgtg |
275 |
Q |
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| T |
49269392 |
tgactggttgcatgaactactcctaaatcgaattttaatggaaagatcagtttgagttggaatgtgtttaaaacctggtgcagagaagtacactggcgag |
49269491 |
T |
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| Q |
276 |
ccgattgcatcagggttacggattacatcaagagggcatgttttgtttcttgt |
328 |
Q |
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| T |
49269492 |
ccgagttctttagggttacgaattacatcaagaggacatgttttgtttcttgt |
49269544 |
T |
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