View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15395_low_23 (Length: 353)

Name: NF15395_low_23
Description: NF15395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15395_low_23
NF15395_low_23
[»] scaffold0140 (1 HSPs)
scaffold0140 (13-336)||(32912-33234)


Alignment Details
Target: scaffold0140 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 13 - 336
Target Start/End: Complemental strand, 33234 - 32912
Alignment:
Q  13 ttctgcaccatatattctttacaacgtagaaattgacaagatttacaaagaataggaagaaaaaagtatggaaaaaacaaatattggatacattgatatt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33234 ttctgcaccatatattctttacaacgtagaaattgacaagatttacaaagaataggaagaaaaa-gtatggaaaaaacaaatattggatacattgatatt 33136  T
Q  113 gttcaaggaacataaattcagaagcttaattttctttttacaagaattaataaatttctttgatctattggcaatcaacacttacaagcactcgaaaaga 212  Q
     ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  33135 attcaaggaacataaattcagaagcttaattttctttttacaagaactaataaatttctttgatctattggaaatcaagacttacaagcactcgaaaaga 33036  T
Q  213 aagatgaatatgagaagaaaagtacagatgaatcagttaattgaatacacaatcagaaagaattaaggtactactgactacctcagtctgtactttgcaa 312  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33035 aagatgaatatgagaagaaaagtacagatgaatgagttaattgaatacacaatcagaaagaattaaggtactactgactacctcagtctgtactttgcaa 32936  T
Q  313 tacttttcttttgtggaagttcct 336  Q
    ||||||||||||||||||||||||    
T  32935 tacttttcttttgtggaagttcct 32912  T

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