View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15395_low_24 (Length: 353)
Name: NF15395_low_24
Description: NF15395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15395_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 21010679 - 21010347
Alignment:
| Q |
1 |
aaaaatgccaaagacttttcttagaaaagttacttttccaacaacaaaagcaacaaaaccaagatcctttgtctggaatctcaagcattgaagatgaaca |
100 |
Q |
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| T |
21010679 |
aaaaatgccaaagacttttcttagaaaagttacttttccaacaacaaaagcaacaaaaccaagatcctttgtctggaatctcaagcattgaagatgaaca |
21010580 |
T |
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| Q |
101 |
aatacaaaagagaggaattgaatcttccaacaatggaatatcactatcagattgtgaagaaagcatagtttcctccccacaacaaacaagaacagaacaa |
200 |
Q |
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| T |
21010579 |
aatacaaaagagaggaattgaatcttccaacaatggaatatcactatcagattgtgaagaaagcatagtatcctccccacaacaaacaagaacagaacaa |
21010480 |
T |
|
| Q |
201 |
ccaatgatgatgatgattgattcaatagcaaaagataaacctttgcctgaaaaaggtaaacttttacaagcagtgatgaaagctggtcctttgcttcaga |
300 |
Q |
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| T |
21010479 |
ccaatgatgatgatgattgattcaatagcaaaagataaacctttgcctgaaaaaggtaaacttttacaagcagtgatgaaagctggtcctttgcttcaga |
21010380 |
T |
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| Q |
301 |
cccttttgcttgcaggaccattgcctcaatgga |
333 |
Q |
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| T |
21010379 |
cccttttacttgcaggaccattacctcaatgga |
21010347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 23323913 - 23323857
Alignment:
| Q |
242 |
tttgcctgaaaaaggtaaacttttacaagcagtgatgaaagctggtcctttgcttca |
298 |
Q |
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| T |
23323913 |
tttgcctcaaaagggtaaacttttacaagctgtgattgatgctggtcctttgcttca |
23323857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 246 - 333
Target Start/End: Original strand, 35450063 - 35450150
Alignment:
| Q |
246 |
cctgaaaaaggtaaacttttacaagcagtgatgaaagctggtcctttgcttcagacccttttgcttgcaggaccattgcctcaatgga |
333 |
Q |
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|||||||||||||||||||| || ||||||||||||||||||||| | ||| | || ||| | |||||||||||| | |||||||||| |
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| T |
35450063 |
cctgaaaaaggtaaacttttgcaggcagtgatgaaagctggtcctcttcttaaaactcttcttcttgcaggaccacttcctcaatgga |
35450150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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