View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15395_low_27 (Length: 347)
Name: NF15395_low_27
Description: NF15395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15395_low_27 |
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| [»] scaffold0312 (1 HSPs) |
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Alignment Details
Target: scaffold0312 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 10690 - 10359
Alignment:
| Q |
1 |
acacaaaccttttcctctcctttgatcccttgctcttcacactcaacgacggtgttctccacaatctgagcaccctttgaccctttcttgatgtttaact |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
10690 |
acacaaaccttttcctctcctttgatcccttgctcttcacactcactgatggtgttcttcacaatctgaacaccctttgaccctttcttgatgtttaact |
10591 |
T |
|
| Q |
101 |
tgttgattatgtattccaccttgtttgatgaaaagggtattgaattagcaacttggcgcggcaagaatgtggccgcatttgaagtggtcttagtgaattg |
200 |
Q |
| |
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|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
10590 |
tgttgattatgtattccaccttgtttaatgaaaaaggtattgaattagcaacttggcgcggcaagaatgttgccgcatttgaagtggtcttagtgaattg |
10491 |
T |
|
| Q |
201 |
caagttcaattttgttccatgatgcaagtccttttccnnnnnnnngagtgctacatttggtttatcatgtaactgagtctcacttgcagcataattgtaa |
300 |
Q |
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|
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10490 |
caagttcagttttgttccatgatgcaagtccttttccaaaaagaagagtgctacatttggtttatcatgtaactgagtctcacttgcagcataattgtaa |
10391 |
T |
|
| Q |
301 |
ctaaatggagaacgtccaactccaacattcat |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
10390 |
ctaaatggagaacgtccaactccaacattcat |
10359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 14)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 419881 - 420212
Alignment:
| Q |
1 |
acacaaaccttttcctctcctttgatcccttgctcttcacactcaacgacggtgttctccacaatctgagcaccctttgaccctttcttgatgtttaact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
419881 |
acacaaaccttttcctctcctttgatcccttgctcttcacactcactgatggtgttcttcacaatctgaacaccctttgaccctttcttgatgtttaact |
419980 |
T |
|
| Q |
101 |
tgttgattatgtattccaccttgtttgatgaaaagggtattgaattagcaacttggcgcggcaagaatgtggccgcatttgaagtggtcttagtgaattg |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
419981 |
tgttgattatgtattccaccttgtttaatgaaaaaggtattgaattagcaacttggcgcggcaagaatgttgccgcatttgaagtggtcttagtgaattg |
420080 |
T |
|
| Q |
201 |
caagttcaattttgttccatgatgcaagtccttttccnnnnnnnngagtgctacatttggtttatcatgtaactgagtctcacttgcagcataattgtaa |
300 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
420081 |
caagttcagttttgttccatgatgcaagtccttttccaaaaagaagagtgctacatttggtttatcatgtaactgagtctcacttgcagcataattgtaa |
420180 |
T |
|
| Q |
301 |
ctaaatggagaacgtccaactccaacattcat |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
420181 |
ctaaatggagaacgtccaactccaacattcat |
420212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 975280 - 974950
Alignment:
| Q |
1 |
acacaaaccttttcctctcctttgatcccttgctcttcacactcaacgacggtgttctccacaatctgagcaccctttgaccctttcttgatgtttaact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
975280 |
acacaaaccttttcctctcctttgatcccttgctcttcacactcactgatggtgttcttcacaatctgaacaccctttgaccctttcttgatgtttaact |
975181 |
T |
|
| Q |
101 |
tgttgattatgtattccaccttgtttgatgaaaagggtattgaattagcaacttggcgcggcaagaatgtggccgcatttgaagtggtcttagtgaattg |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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|
| T |
975180 |
tgttgattatgtattccatcttgtttgatgaaaagggtattgaattagcaacttggcgcggcaagaatgtggctgcatttgaagtggtcttagagaattg |
975081 |
T |
|
| Q |
201 |
caagttcaattttgttccatgatgcaagtccttttccnnnnnnnngagtgctacatttggtttatcatgtaactgagtctcacttgcagcataattgtaa |
300 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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|
| T |
975080 |
caagttcagttttgttccatgatgcaggtccttttccagaaagaagagtgctacatttggtttatcatgtaattgagtctcacttgcagcataattataa |
974981 |
T |
|
| Q |
301 |
ctaaatggagaacgtccaactccaacattca |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
974980 |
ataaatggagaacgtccaactccaacattca |
974950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 176 - 299
Target Start/End: Complemental strand, 936296 - 936173
Alignment:
| Q |
176 |
catttgaagtggtcttagtgaattgcaagttcaattttgttccatgatgcaagtccttttccnnnnnnnngagtgctacatttggtttatcatgtaactg |
275 |
Q |
| |
|
|||||||| |||| || ||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| |
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|
| T |
936296 |
catttgaattggtttttgtgaattgcaagttcaactttgttccttgatgcaaatccttttctaagaagaaaagtgctacatttggtttatcatgtaactg |
936197 |
T |
|
| Q |
276 |
agtctcacttgcagcataattgta |
299 |
Q |
| |
|
|| |||||||||||||||||||| |
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|
| T |
936196 |
tgtttcacttgcagcataattgta |
936173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 236
Target Start/End: Complemental strand, 924149 - 924022
Alignment:
| Q |
109 |
atgtattccaccttgtttgatgaaaagggtattgaattagcaacttggcgcggcaagaatgtggccgcatttgaagtggtcttagtgaattgcaagttca |
208 |
Q |
| |
|
|||| |||||| |||||||||||||| ||||| ||||||||||||| || ||||||||||| || ||| | |||||| |||||||||| ||||| |
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|
| T |
924149 |
atgttttccactttgtttgatgaaaatggtatggaattagcaacttcacgaggcaagaatgttgctccataatctgaggtctttgtgaattgcatgttca |
924050 |
T |
|
| Q |
209 |
attttgttccatgatgcaagtccttttc |
236 |
Q |
| |
|
||||||| |||| ||||||||||||||| |
|
|
| T |
924049 |
attttgtaccattatgcaagtccttttc |
924022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 227
Target Start/End: Complemental strand, 960282 - 960123
Alignment:
| Q |
74 |
cctttgaccctttcttgatgtttaacttgttgattatgtattccaccttgtttgatgaaaagggtattgaattagcaacttggcgcggcaagaatgtggc |
173 |
Q |
| |
|
||||||| |||| ||||||| |||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||| | ||||||||| | | |
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|
| T |
960282 |
cctttgatccttccttgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagggtatggaattagcaacttctctaggcaagaattttgt |
960183 |
T |
|
| Q |
174 |
cgc------atttgaagtggtcttagtgaattgcaagttcaattttgttccatgatgcaa |
227 |
Q |
| |
|
| ||||||||| |||| |||||||||||||||||||||||||||||||||| |
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|
| T |
960182 |
tccattattatttgaagttgtctctttgaattgcaagttcaattttgttccatgatgcaa |
960123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 942321 - 942241
Alignment:
| Q |
74 |
cctttgaccctttcttgatgtttaacttgttgattatgtattccaccttgtttgatgaaaagggtattgaattagcaactt |
154 |
Q |
| |
|
||||||| |||| ||||||| |||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||| |
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|
| T |
942321 |
cctttgatccttccttgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagggtatggaattagcaactt |
942241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 949310 - 949230
Alignment:
| Q |
74 |
cctttgaccctttcttgatgtttaacttgttgattatgtattccaccttgtttgatgaaaagggtattgaattagcaactt |
154 |
Q |
| |
|
||||||| |||| ||||||| |||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||| |
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|
| T |
949310 |
cctttgatccttccttgatggaaaacttgttgagtatgttttccaatttgtttgatgaaaagggtatggaattagcaactt |
949230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 971591 - 971511
Alignment:
| Q |
74 |
cctttgaccctttcttgatgtttaacttgttgattatgtattccaccttgtttgatgaaaagggtattgaattagcaactt |
154 |
Q |
| |
|
||||||| |||| ||||||| |||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||| |
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|
| T |
971591 |
cctttgatccttccttgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagggtatggaattagcaactt |
971511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 227
Target Start/End: Complemental strand, 942208 - 942174
Alignment:
| Q |
193 |
gtgaattgcaagttcaattttgttccatgatgcaa |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
942208 |
gtgaattgcaagttcaattttgttccatgatgcaa |
942174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 227
Target Start/End: Complemental strand, 971478 - 971444
Alignment:
| Q |
193 |
gtgaattgcaagttcaattttgttccatgatgcaa |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
971478 |
gtgaattgcaagttcaattttgttccatgatgcaa |
971444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 949183 - 949151
Alignment:
| Q |
195 |
gaattgcaagttcaattttgttccatgatgcaa |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
949183 |
gaattgcaagttcaattttgttccatgatgcaa |
949151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 237
Target Start/End: Complemental strand, 901895 - 901772
Alignment:
| Q |
114 |
ttccaccttgtttgatgaaaagggtattgaattagcaacttggcgcggcaagaatgtggccgcatttgaagtggtcttagtgaattgcaagttcaatttt |
213 |
Q |
| |
|
|||||| ||||||||||||||||| || ||||||||||||| || ||||| ||||| | ||| | |||||| ||||||||| |||||||||| |
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|
| T |
901895 |
ttccactttgtttgatgaaaagggaatggaattagcaacttcacgaggcaaaaatgttacttcataatttgaggtctttttgaattgcatgttcaatttt |
901796 |
T |
|
| Q |
214 |
gttccatgatgcaagtccttttcc |
237 |
Q |
| |
|
|| ||| |||||||||| |||||| |
|
|
| T |
901795 |
gtaccaagatgcaagtctttttcc |
901772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 186 - 237
Target Start/End: Complemental strand, 909539 - 909488
Alignment:
| Q |
186 |
ggtcttagtgaattgcaagttcaattttgttccatgatgcaagtccttttcc |
237 |
Q |
| |
|
|||||| |||||||| | ||| |||||||| ||||||||||||||||||||| |
|
|
| T |
909539 |
ggtctttgtgaattgtatgttgaattttgtaccatgatgcaagtccttttcc |
909488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 236
Target Start/End: Complemental strand, 916098 - 915980
Alignment:
| Q |
109 |
atgtattccaccttgtttgatgaaaagggtattgaattagcaacttggcgcggcaagaatgtggccgcatttgaagtggtcttagtgaattgcaagttca |
208 |
Q |
| |
|
|||| |||||| |||||||||||||| ||||| |||||||| |||| || ||||||||||| || | |||||| |||||||||| ||||| |
|
|
| T |
916098 |
atgttttccactttgtttgatgaaaatggtatggaattagcgacttcacgaggcaagaatgttgctcc---------ggtctttgtgaattgcatgttca |
916008 |
T |
|
| Q |
209 |
attttgttccatgatgcaagtccttttc |
236 |
Q |
| |
|
||||||| |||| |||||||||||||| |
|
|
| T |
916007 |
attttgtaccattgtgcaagtccttttc |
915980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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