View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15395_low_28 (Length: 343)
Name: NF15395_low_28
Description: NF15395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15395_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 108 - 328
Target Start/End: Complemental strand, 14925574 - 14925354
Alignment:
| Q |
108 |
tttcttaagaaatatgtaatgaatgtttatagaaagtagttagggtaaaaacaattgatagaaataatgtagtgttaaaatttgaaaacatttgataact |
207 |
Q |
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| T |
14925574 |
tttcttaagaaatatgtaatgaatgtttatagaaagtagttagggtaaaaacaattgatagaaataatttagtgttaaaatttgaaaacatttgataact |
14925475 |
T |
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| Q |
208 |
agcaacaagattttcctaaaataataggttaggtgtttcaaatagattcaacgattaaatgagttaaaaacgttaaataatttgggttaaaccctagaag |
307 |
Q |
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| T |
14925474 |
agcaacaagattttcctagaataataggttaggtgtttcaaatagattgaacgattaaatgagttaaataagttaaataatttgggttaaaccctagaag |
14925375 |
T |
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| Q |
308 |
aaaatattaacataacaatat |
328 |
Q |
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| T |
14925374 |
aaaatattaacataacaatat |
14925354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 14925653 - 14925573
Alignment:
| Q |
1 |
caatattttcttatacacaaatgttataatttagtattacttatacacaaaagtatacattattattattctatcaacttt |
81 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14925653 |
caatattttcttatacacaaatgttataatttagtattacttatacacaaaaatatacattattattattctatcaacttt |
14925573 |
T |
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