View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15395_low_3 (Length: 593)
Name: NF15395_low_3
Description: NF15395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15395_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 2e-94; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 169 - 348
Target Start/End: Original strand, 21010907 - 21011086
Alignment:
| Q |
169 |
ttagtcttataaacattttggatgaatagttggtcctcaaattacaagtattttatatgcctataaaatgcaactatgaagaatcaatatttgtaatgaa |
268 |
Q |
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| T |
21010907 |
ttagtcttataaacattttggatgaatagttggtcctcaaattacaagtattttatatgcctataaaatgcaactatgaagaatcaatatttgtaatgaa |
21011006 |
T |
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| Q |
269 |
agaaaagaagtaggtacctttccttggtagtagtaagcccaagatagaagagggctacgttgttgattgtccatgctctt |
348 |
Q |
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| T |
21011007 |
agaaaagaagtaggtacctttccttggtagtagtaagcccaagatagaagagggctacgttgttgagtgtccatgctctt |
21011086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 427 - 580
Target Start/End: Original strand, 21011175 - 21011328
Alignment:
| Q |
427 |
ttaggagtgttatgagggatggttgaatggaaggtgtcttataaaaagtagtccaagttactgtataaggaaggttgccttataaaccgggggttggagn |
526 |
Q |
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| T |
21011175 |
ttaggagtgttatgagggatggttgaatggaaggtgtcttataagaagtagtccaagttactgtataaggaaggttgccttataaaccgggggttggaga |
21011274 |
T |
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| Q |
527 |
nnnnnncagacaataggaaatatgtggccaaatcctaactccctaccctatgct |
580 |
Q |
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| T |
21011275 |
aaaaaacagacaataggaaatctgtggccaaatcctaactccctaccctatgct |
21011328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 21010748 - 21010866
Alignment:
| Q |
1 |
ctttttcttagttcttcttgtactgttactcttgtttgttctagctccattgttgtgtacatcaaggtttgcttcaactcatccattgactatatcacaa |
100 |
Q |
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| T |
21010748 |
ctttttcttagttcttcttgtactgttactcttgtttgttctagctccattgttgtgtacatcaaggtttgcttcaactcatccattgactatatcacaa |
21010847 |
T |
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| Q |
101 |
aaattgcaatgaaattaat |
119 |
Q |
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| T |
21010848 |
aaattgcaatgaaattaat |
21010866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 35449764 - 35449727
Alignment:
| Q |
10 |
agttcttcttgtactgttactcttgtttgttctagctc |
47 |
Q |
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| T |
35449764 |
agttcttcttgtgctgttactcttgtttgttcaagctc |
35449727 |
T |
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