View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15395_low_31 (Length: 323)
Name: NF15395_low_31
Description: NF15395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15395_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 22 - 312
Target Start/End: Complemental strand, 45944760 - 45944471
Alignment:
| Q |
22 |
acaaccacatgttcctccaccaattactatataatcatatgttaagattggaggagcaaatgtggcttctttgataaatgtgtacattggtgctgcattg |
121 |
Q |
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| T |
45944760 |
acaaccacatgttcctccaccaattactatataatcatatgttaagattggaggagcaaatgtggcttctttgataaatgtgtacattggtgctgcattg |
45944661 |
T |
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| Q |
122 |
acacacagaagnnnnnnnntaaagatcacataaaatggctcataacatcaaaagagattcaaagagacgctacataactacctaataat-nnnnnnnnnn |
220 |
Q |
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| T |
45944660 |
a--cacagaagaaaaaaaataaagatcacataaaatgactcataacatcaaaagagattcaaagagacgctacataactaccttataataaaaaataaaa |
45944563 |
T |
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| Q |
221 |
nnnntttgctcctctcattttctattctcaaattctttgattaaaaggttgaagaaatcaacttctatactgataaaatcaattcgatgatg |
312 |
Q |
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||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
45944562 |
aaaaattgttcctctcattttctattctcaaattctttgactaaaaggttgaagaaatcaacttctatactgataagatcaatttgatgatg |
45944471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 45938008 - 45937928
Alignment:
| Q |
22 |
acaaccacatgttcctccaccaattactatataatcatatgttaagattggaggagcaaatgtggcttctttgataaatgt |
102 |
Q |
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|||||||||||||||||| || || |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
45938008 |
acaaccacatgttcctccccctatgactatatagtcatatgttaagattggtggagcaaatgttgcttctttgataaatgt |
45937928 |
T |
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