View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15395_low_32 (Length: 322)
Name: NF15395_low_32
Description: NF15395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15395_low_32 |
 | |
|
| [»] scaffold0691 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 2756471 - 2756232
Alignment:
| Q |
1 |
ttaataatcttgtgaaagattatggtgaaattgttgatgagattaaggtgctttcgaggaattagacggtttctaaactaaagaggcctccatgccttta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||| ||||||||||||||| |||||||| |
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|
| T |
2756471 |
ttaataatcttgtgaaagattatggtgaaattgttgatgagattaaggtgctttcgtggaattggatggtttctagactaaagaggcctccgtgccttta |
2756372 |
T |
|
| Q |
101 |
ttacgagtggtgtttgaaccccaagaaatgtttactgagatagttggggtagttttagaggcgtccgggacacttggagttgctggctgctggtttcagc |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2756371 |
ttacgagtggtgttggaaccccaagaaatgtttactgagatagttggggtagttttagaggcgtccgggacacttggagttgctggctgctggtttcagc |
2756272 |
T |
|
| Q |
201 |
aggtttttctgctaatgtcatgtcatgaggcaggaactgc |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2756271 |
aggtttttctgctaatgtcatgtcatgaggcaggaactgc |
2756232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 5 - 171
Target Start/End: Complemental strand, 42629164 - 42628998
Alignment:
| Q |
5 |
taatcttgtgaaagattatggtgaaattgttgatgagattaaggtgctttcgaggaattagacggtttctaaactaaagaggcctccatgcctttattac |
104 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||| |||| |||||||||| |||||| | ||||| ||| ||| || || ||||| ||||| ||||| |
|
|
| T |
42629164 |
taatcttgtgaaagaatttggtgaaattgttgatgaaattatggtgctttcgtggaattgggcggttactagactgaaaagtcctccctgcctctattat |
42629065 |
T |
|
| Q |
105 |
gagtggtgtttgaaccccaagaaatgtttactgagatagttggggtagttttagaggcgtccgggac |
171 |
Q |
| |
|
||||||||| |||||||||| ||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42629064 |
gagtggtgtcggaaccccaaggaatgtcttctgagatagttggggtagttttagaggcgtccgggac |
42628998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 161
Target Start/End: Complemental strand, 3761178 - 3761024
Alignment:
| Q |
7 |
atcttgtgaaagattatggtgaaattgttgatgagattaaggtgctttcgaggaattagacggtttctaaactaaagaggcctccatgcctttattacga |
106 |
Q |
| |
|
|||||||||||||| || |||| ||||||||||||||||||||| || |||||| | | || | | ||||||| |||| ||||| |||||||| |
|
|
| T |
3761178 |
atcttgtgaaagatccgggagaaactgttgatgagattaaggtgctctcttggaattgggtgcgatcaagattaaagagttctccctgcctctattacga |
3761079 |
T |
|
| Q |
107 |
gtggtgtttgaaccccaagaaatgtttactgagatagttggggtagttttagagg |
161 |
Q |
| |
|
||| ||||||||||||||| |||||||||||| |||| ||||||||||||||||| |
|
|
| T |
3761078 |
gtgctgtttgaaccccaaggaatgtttactgatatagctggggtagttttagagg |
3761024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 3678387 - 3678226
Alignment:
| Q |
18 |
gattatggtgaaattgttgatgagattaaggtgctttcgaggaattagacggtttctaaactaaagaggcctccatgcctttattacgagtggtgtttga |
117 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||| ||||| |||||| | | || ||| ||| ||||| ||||| ||||| |||||| ||| ||||| || |
|
|
| T |
3678387 |
gattttggtgaaattgttgaggagattaaggtgatttcgtggaattgggtgattactagacttaagagtcctccttgcctctattacaagttgtgttgga |
3678288 |
T |
|
| Q |
118 |
accccaagaaatgtttactgagatagttggggtagttttagaggcgtccgggacacttggagt |
180 |
Q |
| |
|
|||||| |||| ||| | |||||| | ||| ||||||||||| |||| |||| ||||||| |
|
|
| T |
3678287 |
accccatcgaatgcttattaagataggt-gggcagttttagaggtgtcctggacttttggagt |
3678226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 52 - 203
Target Start/End: Complemental strand, 19883586 - 19883435
Alignment:
| Q |
52 |
tttcgaggaattagacggtttctaaactaaagaggcctccatgcctttattacgagtggtgtttgaaccccaagaaatgtttactgagatagttggggta |
151 |
Q |
| |
|
||||| |||||| | |||| |||| ||||||||| ||||| ||||| |||||||||||||||| |||||||||| |||||||| |||||||||||||||| |
|
|
| T |
19883586 |
tttcgtggaattgggcggtgtctagactaaagagtcctccgtgcctctattacgagtggtgttggaaccccaaggaatgtttattgagatagttggggta |
19883487 |
T |
|
| Q |
152 |
gttttagaggcgtccgggacacttggagttgctggctgctggtttcagcagg |
203 |
Q |
| |
|
|||||||||| ||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
19883486 |
gttttagaggtgtccgggactcttggtgttgctggctgctggtttcagcagg |
19883435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 171
Target Start/End: Original strand, 48888137 - 48888284
Alignment:
| Q |
24 |
ggtgaaattgttgatgagattaaggtgctttcgaggaattagacggtttctaaactaaagaggcctccatgcctttattacgagtggtgtttgaacccca |
123 |
Q |
| |
|
|||||||| |||||||| ||||||||||| ||| |||||| | | ||||| ||||||||| ||||| ||||| |||||||||||||||| |||||||| |
|
|
| T |
48888137 |
ggtgaaatggttgatgatattaaggtgctctcgtggaattgggtgaattctagactaaagagtcctccttgcctctattacgagtggtgttggaacccca |
48888236 |
T |
|
| Q |
124 |
agaaatgtttactgagatagttggggtagttttagaggcgtccgggac |
171 |
Q |
| |
|
|| ||||| | |||||| | |||||||||| |||||| ||||||||| |
|
|
| T |
48888237 |
aggaatgtcttttgagattggtggggtagttctagaggtgtccgggac |
48888284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 171
Target Start/End: Original strand, 6232182 - 6232312
Alignment:
| Q |
42 |
attaaggtgctttcgaggaattagacggtttctaaactaaagaggcctccatgcctttattacgagtggtgtttgaaccccaagaaatgtttactgagat |
141 |
Q |
| |
|
||||||||| ||||| |||||| | | ||||| ||| | ||| ||||||||||| |||||||||||||| | |||||||||| |||| ||| |||||| |
|
|
| T |
6232182 |
attaaggtgatttcgtggaattgggctaattctagacttaggagtcctccatgcctctattacgagtggtgctggaaccccaaggaatgcttattgagat |
6232281 |
T |
|
| Q |
142 |
agt-tggggtagttttagaggcgtccgggac |
171 |
Q |
| |
|
| | ||||| ||||||||||| ||||||||| |
|
|
| T |
6232282 |
aatgtggggcagttttagaggtgtccgggac |
6232312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 18847988 - 18848158
Alignment:
| Q |
1 |
ttaataatcttgtgaaagattatggtgaaattgttgatgagattaaggtgctttcgaggaattagacggtttctaaactaaagaggcctccatgccttta |
100 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||| ||||||||||||| | |||||| | ||||| ||| ||| || || ||||| ||||| || |
|
|
| T |
18847988 |
ttaataatcttgtgaaagatcgtgatgaaattgttgatgacattaaggtgctttggtggaattgggcggttactagacttaaaagtcctccctgcctcta |
18848087 |
T |
|
| Q |
101 |
ttacgagtggtgtttgaaccccaagaaatgtttactgagatagttggggtagttttagaggcgtccgggac |
171 |
Q |
| |
|
|||||||||||||| |||||||||| |||| || |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
18848088 |
ttacgagtggtgttggaaccccaaggaatgcctattgagatagttggggtagttttagaggtgtccgggac |
18848158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 10 - 199
Target Start/End: Complemental strand, 42111169 - 42110980
Alignment:
| Q |
10 |
ttgtgaaagattatggtgaaattgttgatgagattaaggtgctttcgaggaattagacggtttctaaactaaagaggcctccatgcctttattacgagtg |
109 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||| || |||||| | || || | | ||| ||||| |||| ||||| | || ||||| |
|
|
| T |
42111169 |
ttgtgaaagattatggggaaattgttgatgacattaaggtgctctcttggaattgggcgattacaagacttaagagtcctcactgcctcttttttgagtg |
42111070 |
T |
|
| Q |
110 |
gtgtttgaaccccaagaaatgtttactgagatagttggggtagttttagaggcgtccgggacacttggagttgctggctgctggtttcag |
199 |
Q |
| |
|
||||| |||||||||| |||| || || || || ||||||||||||||||| ||||||||| |||| || ||||| |||||| ||||| |
|
|
| T |
42111069 |
gtgttggaaccccaaggaatgcttgctccgacaggtggggtagttttagaggtgtccgggacttttggtgtcgctggttgctgggttcag |
42110980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 167
Target Start/End: Original strand, 55329086 - 55329250
Alignment:
| Q |
3 |
aataatcttgtgaaagattatggtgaaattgttgatgagattaaggtgctttcgaggaattagacggtttctaaactaaagaggcctccatgcctttatt |
102 |
Q |
| |
|
||||| ||| |||| |||| |||||||||||| || || ||||||||| ||||| | |||| ||| ||| | ||| ||||| |||| ||||| |||| |
|
|
| T |
55329086 |
aataaccttttgaaggattttggtgaaattgtggaggaaattaaggtgatttcgtgaaattgaacgaattcaagacttaagagttctccttgcctctatt |
55329185 |
T |
|
| Q |
103 |
acgagtggtgtttgaaccccaagaaatgtttactgagatagttggggtagttttagaggcgtccg |
167 |
Q |
| |
|
|||||||||||| ||||| |||| |||| ||| |||||||| ||||| ||||||||||| ||||| |
|
|
| T |
55329186 |
acgagtggtgttggaacctcaaggaatgcttattgagataggtggggcagttttagaggtgtccg |
55329250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 51361206 - 51361376
Alignment:
| Q |
1 |
ttaataatcttgtgaaagattatggtgaaattgttgatgagattaaggtgctttcgaggaattagacggtttctaaactaaagaggcctccatgccttta |
100 |
Q |
| |
|
||||||| |||| |||||| | |||||||||||| |||| ||||||||||||| | |||||| ||||||| ||| ||| || || |||| ||||| || |
|
|
| T |
51361206 |
ttaataagattgttaaagatcacggtgaaattgtttatgacattaaggtgcttttgtggaattggacggttactagactcaaaagttctccctgcctcta |
51361305 |
T |
|
| Q |
101 |
ttacgagtggtgtttgaaccccaagaaatgtttactgagatagttggggtagttttagaggcgtccgggac |
171 |
Q |
| |
|
||| |||||||||| |||||||||| |||| || |||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
51361306 |
ttatgagtggtgttggaaccccaaggaatgcctattgagatagttggggtagttttagaggtgtcagggac |
51361376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 13154941 - 13155095
Alignment:
| Q |
1 |
ttaataatcttgtgaaagattatggtgaaattgttgatgagattaaggtgctttcgaggaattagacggtttctaaactaaagaggcctccatgccttta |
100 |
Q |
| |
|
|||| |||||||||||||| | || |||||||||||||| |||||||| || || ||||||||||| | |||| | ||||||| ||| | ||||| || |
|
|
| T |
13154941 |
ttaacaatcttgtgaaagaatcgggagaaattgttgatgacattaaggtactctcttggaattagacgctatctagattaaagagtcctacttgcctcta |
13155040 |
T |
|
| Q |
101 |
ttacgagtggtgtttgaaccccaagaaatgtttactgagatagttggggtagttt |
155 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||| || | ||||||||| |
|
|
| T |
13155041 |
ttacgagtggtgtttgaaccctaaagaatgtttactgagaaagctcgggtagttt |
13155095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 199
Target Start/End: Original strand, 44684414 - 44684603
Alignment:
| Q |
10 |
ttgtgaaagattatggtgaaattgttgatgagattaaggtgctttcgaggaattagacggtttctaaactaaagaggcctccatgcctttattacgagtg |
109 |
Q |
| |
|
||||||||||| |||| |||||||||||||| ||||||||||| || |||||| | || || | ||||| ||||| ||||| ||||| | ||| ||||| |
|
|
| T |
44684414 |
ttgtgaaagatcatggggaaattgttgatgacattaaggtgctctcttggaattgggcgattacaaaacttaagagtcctccctgcctcttttatgagtg |
44684513 |
T |
|
| Q |
110 |
gtgtttgaaccccaagaaatgtttactgagatagttggggtagttttagaggcgtccgggacacttggagttgctggctgctggtttcag |
199 |
Q |
| |
|
||||| |||||||||| |||| || || || || ||||||||||||||||| ||| ||||| |||| || ||||| |||||| ||||| |
|
|
| T |
44684514 |
gtgttggaaccccaaggaatgcttgctccgacaggtggggtagttttagaggtgtctgggacttttggtgtcgctggttgctgggttcag |
44684603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 171
Target Start/End: Original strand, 42202635 - 42202793
Alignment:
| Q |
13 |
tgaaagattatggtgaaattgttgatgagattaaggtgctttcgaggaattagacggtttctaaactaaagaggcctccatgcctttattacgagtggtg |
112 |
Q |
| |
|
|||| |||||||||||||| ||||| || ||||||||| ||| | |||||| | | ||||| ||| ||||| ||||| ||||| |||||||||||||| |
|
|
| T |
42202635 |
tgaaggattatggtgaaatagttgaggaaattaaggtgattttgtggaattgggtgaattctagacttaagagtcctccttgcctctattacgagtggtg |
42202734 |
T |
|
| Q |
113 |
tttgaaccccaagaaatgtttactgagatagttggggtagttttagaggcgtccgggac |
171 |
Q |
| |
|
|| |||||| | |||| ||| |||||||| ||||| ||||||||||| ||| ||||| |
|
|
| T |
42202735 |
ttggaaccctatcgaatgcttattgagatagatggggcagttttagaggtgtctgggac |
42202793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 10 - 199
Target Start/End: Original strand, 1121 - 1310
Alignment:
| Q |
10 |
ttgtgaaagattatggtgaaattgttgatgagattaaggtgctttcgaggaattagacggtttctaaactaaagaggcctccatgcctttattacgagtg |
109 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||| | |||||| | || || | | ||| ||||| ||||| ||||| | ||| ||||| |
|
|
| T |
1121 |
ttgtgaaagattatggggaaattgttgatgacattaaggtgctcccttggaattgggcgattacaagacttaagagtcctccctgcctcttttatgagtg |
1220 |
T |
|
| Q |
110 |
gtgtttgaaccccaagaaatgtttactgagatagttggggtagttttagaggcgtccgggacacttggagttgctggctgctggtttcag |
199 |
Q |
| |
|
||||| ||| |||||| |||| || || || || ||||||||||||||||| ||||||||| |||| || ||||| |||||| ||||| |
|
|
| T |
1221 |
gtgttggaagcccaaggaatgcttgctccgacaggtggggtagttttagaggtgtccgggacttttggtgtcgctggttgctgggttcag |
1310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 171
Target Start/End: Complemental strand, 380794 - 380664
Alignment:
| Q |
42 |
attaaggtgctttcgaggaattagacggtttctaaactaaagaggcctccatgcctttattacgagtggtgtttgaaccccaagaaatgtttactgagat |
141 |
Q |
| |
|
||||||||| ||||| |||||| | | ||||| ||| | ||| ||||||||||| |||||||||||||| | |||||||||| |||| ||| |||||| |
|
|
| T |
380794 |
attaaggtgatttcgtggaattgggctaattctagacttaggagtcctccatgcctctattacgagtggtgctggaaccccaaggaatgcttattgagat |
380695 |
T |
|
| Q |
142 |
-agttggggtagttttagaggcgtccgggac |
171 |
Q |
| |
|
| ||||| ||||||||||| ||||||||| |
|
|
| T |
380694 |
aacgtggggcagttttagaggtgtccgggac |
380664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 79 - 161
Target Start/End: Original strand, 16080463 - 16080545
Alignment:
| Q |
79 |
taaagaggcctccatgcctttattacgagtggtgtttgaaccccaagaaatgtttactgagatagttggggtagttttagagg |
161 |
Q |
| |
|
||||||| ||||| ||||| | ||| |||||||||| |||||||||| ||||||| ||||| | |||||||||||||||||| |
|
|
| T |
16080463 |
taaagagtcctccttgcctcttttatgagtggtgttggaaccccaaggaatgtttgatgagaaaattggggtagttttagagg |
16080545 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 142
Target Start/End: Original strand, 38970994 - 38971123
Alignment:
| Q |
13 |
tgaaagattatggtgaaattgttgatgagattaaggtgctttcgaggaattagacggtttctaaactaaagaggcctccatgcctttattacgagtggtg |
112 |
Q |
| |
|
|||| |||| |||||||||||| || || ||||||||| ||||| |||||| | | ||||| ||| || || |||| ||||| |||||||||||||| |
|
|
| T |
38970994 |
tgaaggattttggtgaaattgtggaggaaattaaggtgatttcgtggaattgggcaaattctagacttaaaagtcctcattgcctctattacgagtggtg |
38971093 |
T |
|
| Q |
113 |
tttgaaccccaagaaatgtttactgagata |
142 |
Q |
| |
|
|| ||||||||| |||| ||| ||||||| |
|
|
| T |
38971094 |
ttggaaccccaaagaatgcttattgagata |
38971123 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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