View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15395_low_34 (Length: 293)
Name: NF15395_low_34
Description: NF15395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15395_low_34 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 15 - 284
Target Start/End: Original strand, 1046832 - 1047100
Alignment:
| Q |
15 |
tcaataaatatggtattttgtattgtcatatggtagaatgaataagtaatgaaactattgacgataaaacaaaatgtcttcacaacttggtgccagcgag |
114 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1046832 |
tcaataaatatggtattctgtattgtcatatggtagaatgaataagtaatgaaactattgatgataaaacaaaatgtcttcacaacttggtgccagtgag |
1046931 |
T |
|
| Q |
115 |
aaaggctttcaatgacactttcatggttaccggaagctatgaaagactagacgggatcaatgctatagctgaaaataggccagatcttgttgcttacgac |
214 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1046932 |
aaaggctttcaatggcactttcatggttaccggaagctatgaaagactagacgggatcaatgctatagctgaaaatagggtagatcttgttgcttacgac |
1047031 |
T |
|
| Q |
215 |
cgttttattcatagctaatccagatttgccaaagaggtttgcacttaatgctcccctaaacaagtataat |
284 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1047032 |
cg-tttattcatagctaatccagatttgccaaagagatttgcacttaatgctcccctaaacaagtataat |
1047100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 113 - 284
Target Start/End: Original strand, 1053602 - 1053772
Alignment:
| Q |
113 |
agaaaggctttcaatgacactttcatggttaccggaagctatgaaagactagacgggatcaatgctatagctgaaaataggccagatcttgttgcttacg |
212 |
Q |
| |
|
||||||| |||||||| ||||| |||||||| ||| |||||||||||| ||| || |||||||||||||||||||||||| |||||||| ||||||| | |
|
|
| T |
1053602 |
agaaaggttttcaatggaacttttatggttactggaggctatgaaagacaagatggaatcaatgctatagctgaaaatagggcagatcttattgcttatg |
1053701 |
T |
|
| Q |
213 |
accgttttattcatagctaatccagatttgccaaagaggtttgcacttaatgctcccctaaacaagtataat |
284 |
Q |
| |
|
|| ||| |||||| ||||||||||||| |||||||| ||||||||||||||||| || |||||||||||| |
|
|
| T |
1053702 |
gtcg-tttgttcatatctaatccagatttaccaaagagatttgcacttaatgctcctcttaacaagtataat |
1053772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 102 - 284
Target Start/End: Original strand, 1044333 - 1044514
Alignment:
| Q |
102 |
tggtgccagcgagaaaggctttcaatgacactttcatggttaccggaagctatgaaagactagacgggatcaatgctatagctgaaaataggccagatct |
201 |
Q |
| |
|
|||||||| ||||||||||||||||| | ||||||||| | | ||| ||||||| |||| |||||||||| |||||||||||||||| | | ||||||| |
|
|
| T |
1044333 |
tggtgccaatgagaaaggctttcaatggctctttcatggctgcaggaggctatgacagacaagacgggatcgatgctatagctgaaaacaaggcagatct |
1044432 |
T |
|
| Q |
202 |
tgttgcttacgaccgttttattcatagctaatccagatttgccaaagaggtttgcacttaatgctcccctaaacaagtataat |
284 |
Q |
| |
|
||| | ||| | || ||| ||| |||| |||||||||||||||||||| ||||||||||||||||| || |||||||||||| |
|
|
| T |
1044433 |
tgtagtttatggtcg-tttgttcttagcaaatccagatttgccaaagagatttgcacttaatgctcctctcaacaagtataat |
1044514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 112 - 268
Target Start/End: Original strand, 1033956 - 1034111
Alignment:
| Q |
112 |
gagaaaggctttcaatgacactttcatggttaccggaagctatgaaagactagacgggatcaatgctatagctgaaaataggccagatcttgttgcttac |
211 |
Q |
| |
|
||||||||||||||||| |||||||||||| | ||| | ||||| |||| ||| ||||||||||||||||| || |||||| |||||||||||| ||| |
|
|
| T |
1033956 |
gagaaaggctttcaatggtactttcatggttgcgggaggttatgacagacaagatgggatcaatgctatagcagataatagggcagatcttgttgtttat |
1034055 |
T |
|
| Q |
212 |
gaccgttttattcatagctaatccagatttgccaaagaggtttgcacttaatgctcc |
268 |
Q |
| |
|
| || ||| ||| |||| |||||||||||||| ||||| |||||||| || ||||| |
|
|
| T |
1034056 |
ggtcg-tttgttcttagcgaatccagatttgccgaagagatttgcactaaacgctcc |
1034111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 167 - 283
Target Start/End: Original strand, 1058921 - 1059036
Alignment:
| Q |
167 |
gggatcaatgctatagctgaaaataggccagatcttgttgcttacgaccgttttattcatagctaatccagatttgccaaagaggtttgcacttaatgct |
266 |
Q |
| |
|
||||||||||| ||||||||||||||| |||| ||||||| || | ||||| ||| ||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
1058921 |
gggatcaatgccatagctgaaaataggacagaccttgttgtatatggtcgtttg-ttcttagctaatccagatttgccgaagagatttgcacttaatgct |
1059019 |
T |
|
| Q |
267 |
cccctaaacaagtataa |
283 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
1059020 |
cctctaaacaagtataa |
1059036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 112 - 283
Target Start/End: Original strand, 1071685 - 1071855
Alignment:
| Q |
112 |
gagaaaggctttcaatgacactttcatggttaccggaagctatgaaagactagacgggatcaatgctatagctgaaaataggccagatcttgttgcttac |
211 |
Q |
| |
|
||||||||| ||||| | ||||||||||||| | ||| | || || ||| || ||||||||||| ||||||||||| ||| |||| || |||| || |
|
|
| T |
1071685 |
gagaaaggccttcaaaggcactttcatggttgcaggaggttacgaccgacatgatgggatcaatgccatagctgaaaacagggcagacctagttgtatat |
1071784 |
T |
|
| Q |
212 |
gaccgttttattcatagctaatccagatttgccaaagaggtttgcacttaatgctcccctaaacaagtataa |
283 |
Q |
| |
|
| ||||| ||| ||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||| |
|
|
| T |
1071785 |
ggtcgtttg-ttcttagctaatccagatttgccaaagagatttgcacttgatgctcctctaaacaagtataa |
1071855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 283
Target Start/End: Original strand, 1065958 - 1066128
Alignment:
| Q |
112 |
gagaaaggctttcaatgacactttcatggttaccggaagctatgaaagactagacgggatcaatgctatagctgaaaataggccagatcttgttgcttac |
211 |
Q |
| |
|
||||||||| ||||| | ||||||||||||| | ||| | || || ||| || ||||||||||| ||||||||||| ||| |||| ||||||| || |
|
|
| T |
1065958 |
gagaaaggccttcaaaggcactttcatggttgcaggaggttacgaccgacatgatgggatcaatgccatagctgaaaacagggcagaccttgttgtatat |
1066057 |
T |
|
| Q |
212 |
gaccgttttattcatagctaatccagatttgccaaagaggtttgcacttaatgctcccctaaacaagtataa |
283 |
Q |
| |
|
| ||||| ||| |||||||||||||||| |||||||| ||||||||| ||||||| || ||||| ||||| |
|
|
| T |
1066058 |
ggtcgtttg-ttcttagctaatccagatttaccaaagagatttgcacttgatgctcctctgaacaaatataa |
1066128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 87 - 283
Target Start/End: Complemental strand, 1640625 - 1640430
Alignment:
| Q |
87 |
aatgtcttcacaacttggtgccagcgagaaaggctttcaatgacactttcatggttaccggaagctatgaaagactagacgggatcaatgctatagctga |
186 |
Q |
| |
|
|||||||||||| |||||||||| |||||| || ||||||| ||||| || ||| ||||| ||||| ||| ||| ||||| |||| |||| ||| |
|
|
| T |
1640625 |
aatgtcttcacagcttggtgccaatgagaaaagccttcaatggaacttttatagttgccggaggctattcgcgacaagatgggattgatgccatagttga |
1640526 |
T |
|
| Q |
187 |
aaataggccagatcttgttgcttacgaccgttttattcatagctaatccagatttgccaaagaggtttgcacttaatgctcccctaaacaagtataa |
283 |
Q |
| |
|
||||| | |||||||||||||||| | || || || ||| ||||||||||||| |||||||| || || || ||||||| || ||||||||||| |
|
|
| T |
1640525 |
aaataagacagatcttgttgcttatggtcg-cttgtttatatctaatccagatttaccaaagagattcgcgctcgatgctcctctcaacaagtataa |
1640430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University