View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15395_low_36 (Length: 277)
Name: NF15395_low_36
Description: NF15395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15395_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 11 - 262
Target Start/End: Complemental strand, 40173349 - 40173094
Alignment:
| Q |
11 |
agaatgattgttatggaagtgttctctcttcactttattgtagatccaaacaaataaattgcattaaaataattttttgttgaaatgtaataatttagag |
110 |
Q |
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| T |
40173349 |
agaatgattgttatggaagtgttctctcttcactttattgtagattcaaacaaataaattgcattaaaataattttttgttgaaatgtaataatttagag |
40173250 |
T |
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| Q |
111 |
ttttgaggagaccaatttagt-----nnnnnnnnntgttgtgttgaaaatatttgannnnnnnggtatataaagaggacaaagccgaaagaaaaaaccaa |
205 |
Q |
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| T |
40173249 |
ttttgaggagatcaatttagtaaaaaaaaaaaatatgttgtgttgaaaatatttgatttttttggtatataaagaggacaaagccgaaa-aaaaaaccaa |
40173151 |
T |
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| Q |
206 |
agaaatatcttttgttgaaatgtaaatgagatgttgagttcaacacgcatactattt |
262 |
Q |
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| T |
40173150 |
agaaatatcttttgttgaaatgtaaatgagatgttgagttcaacacgcatactattt |
40173094 |
T |
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