View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15395_low_47 (Length: 217)
Name: NF15395_low_47
Description: NF15395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15395_low_47 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 10 - 217
Target Start/End: Complemental strand, 37872123 - 37871916
Alignment:
| Q |
10 |
ctatcatcttatacaaagcatcgattttctgtaaggcatagtcaacttttacatccacactcttttcacttacattttcagcaggattaagttcaagctc |
109 |
Q |
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| T |
37872123 |
ctatcatcttatacaaagcatcgattttctgtaaggcatagtcaacttttacatccacactcttttcacttacattttcagcaggattaagttcaagctc |
37872024 |
T |
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| Q |
110 |
agactcaggctcaaaaagtaactgttccatttcagcttgttcattttgagtgttctcccgtagcaatacttgcactggctcagtttgaggattctcctgt |
209 |
Q |
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| T |
37872023 |
agactcaggctcaaatagtaactgttccatttcagcttgttcattttgagtgttctcccgtagcaatacttgcactggctcagtttgaggattctcctgt |
37871924 |
T |
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| Q |
210 |
cgcaatac |
217 |
Q |
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| T |
37871923 |
ggcaatac |
37871916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 37871932 - 37871877
Alignment:
| Q |
162 |
ttctcccgtagcaatacttgcactggctcagtttgaggattctcctgtcgcaatac |
217 |
Q |
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| T |
37871932 |
ttctcctgtggcaatacttgcactggctcagtttgacgattctcctgtggcaatac |
37871877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 37871893 - 37871857
Alignment:
| Q |
162 |
ttctcccgtagcaatacttgcactggctcagtttgag |
198 |
Q |
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| T |
37871893 |
ttctcctgtggcaatacttgcactggctcagtttgag |
37871857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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