View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15395_low_9 (Length: 448)
Name: NF15395_low_9
Description: NF15395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15395_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 16 - 440
Target Start/End: Complemental strand, 24525172 - 24524749
Alignment:
| Q |
16 |
aatttctctgtacacgaaacacatagttcagatcaaggtctttgagggtggttgtttcatcaatctcatcctccggtttatctgttgcacgaccatgtga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24525172 |
aatttctctgtacacgaaacacatagttcagatcaaggtctttgagggtggttgtttcatcaatctcatcctcaggtttatctgttgcacgaccatgtga |
24525073 |
T |
|
| Q |
116 |
agatcctttcaaatcaaatcgtctatgaattggatattcagagcagaaaagattgcccatcacaataaaccggatctgattttccaataacaatgaaaag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24525072 |
agatcctttcaaatcaaatcgtctatgaattggatattcagagcagaaaagattgcccatcacaataaaccggatctgattttccaataacaatgaaaag |
24524973 |
T |
|
| Q |
216 |
tcaggcacagggaaacacggtacaaacgttccatgcaactacaataatatatctatcaatccataccttttggcctccaattggtttcacgcaatgtacc |
315 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24524972 |
tcaggcacagggaaacatggtacaaacgttccatacaactacaat-atatatctatcaatccataccttttggcctccaattggtttcacgcaatgtacc |
24524874 |
T |
|
| Q |
316 |
ccaaagaattttgtcaccagtgaattctcatatttggacacgtgtttgtaatagcttcgaagcatccgaagaagcacctaaaagttggaagtcagaaata |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24524873 |
ccaaagaattttgtcaccagtgaattctcatatttggacacgtgtttgtaatagcttcgaagcatccgaagaagcacctaaaagttggaagtcagaaata |
24524774 |
T |
|
| Q |
416 |
atacatcgtcaatgcgagtataatc |
440 |
Q |
| |
|
| |||||||||||||||||| |||| |
|
|
| T |
24524773 |
acacatcgtcaatgcgagtacaatc |
24524749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 6e-35; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 30 - 193
Target Start/End: Complemental strand, 32939022 - 32938859
Alignment:
| Q |
30 |
cgaaacacatagttcagatcaaggtctttgagggtggttgtttcatcaatctcatcctccggtttatctgttgcacgaccatgtgaagatcctttcaaat |
129 |
Q |
| |
|
||||||||| | || ||||| ||||||||||||||||| ||||||||||| ||||| || | |||||||| ||| |||||||| ||||| ||||| | |
|
|
| T |
32939022 |
cgaaacacaaaattgagatcgaggtctttgagggtggtagtttcatcaatttcatcttcagtcttatctgtcatacggccatgtgacgatcccttcaagt |
32938923 |
T |
|
| Q |
130 |
caaatcgtctatgaattggatattcagagcagaaaagattgcccatcacaataaaccggatctg |
193 |
Q |
| |
|
||||||| ||||| ||||||||||| |||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
32938922 |
caaatcgcctatggattggatattctgagcagaaaagattgcccatcacaatgaaccgggtctg |
32938859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 277 - 401
Target Start/End: Complemental strand, 32938776 - 32938652
Alignment:
| Q |
277 |
cataccttttggcctccaattggtttcacgcaatgtaccccaaagaattttgtcaccagtgaattctcatatttggacacgtgtttgtaatagcttcgaa |
376 |
Q |
| |
|
|||||||| ||||||||||||||||| || |||||||||||| ||||||||||||| ||||||| |||||||| || || |||| |||||| ||||||| |
|
|
| T |
32938776 |
cataccttctggcctccaattggtttgacacaatgtaccccatagaattttgtcacaagtgaatcctcatattgagaaacatgttcgtaataacttcgaa |
32938677 |
T |
|
| Q |
377 |
gcatccgaagaagcacctaaaagtt |
401 |
Q |
| |
|
||||||||||||| ||||| ||||| |
|
|
| T |
32938676 |
gcatccgaagaagtacctataagtt |
32938652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 118 - 208
Target Start/End: Original strand, 433847 - 433936
Alignment:
| Q |
118 |
atcctttcaaatcaaatcgtctatgaattggatattcagagcagaaaagattgcccatcacaataaaccggatctgattttccaataacaa |
208 |
Q |
| |
|
|||| ||||| |||||||||| ||| ||||||||||| |||||||||| ||||||||||| || || ||| ||||||||| ||||||||| |
|
|
| T |
433847 |
atcccttcaagtcaaatcgtccatggattggatattctgagcagaaaacattgcccatcatgatgaagcgggtctgatttt-caataacaa |
433936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 277 - 389
Target Start/End: Original strand, 434002 - 434114
Alignment:
| Q |
277 |
cataccttttggcctccaattggtttcacgcaatgtaccccaaagaattttgtcaccagtgaattctcatatttggacacgtgtttgtaatagcttcgaa |
376 |
Q |
| |
|
|||||||| ||||||||||||||||| || ||||||| || |||||||| |||| || |||||||| || | || || |||| |||||| ||||||| |
|
|
| T |
434002 |
cataccttctggcctccaattggtttgacatgatgtaccacatagaattttttcacaagcgaattctcgtaatgagaaacatgttcgtaataacttcgaa |
434101 |
T |
|
| Q |
377 |
gcatccgaagaag |
389 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
434102 |
gcatccggagaag |
434114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University