View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15396_high_12 (Length: 387)
Name: NF15396_high_12
Description: NF15396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15396_high_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 13 - 372
Target Start/End: Complemental strand, 47000483 - 47000121
Alignment:
| Q |
13 |
catcatgctcgaaacggagtgttccttattcttgaaataaatactatgaatagaaataagggtattgctaacggatgatttaagagcacatgttaaacaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
47000483 |
catcatgctcgaaacggagtgttccttattcttgaaataaatactatgaataaaaataagggtattgctaacggatgatctaagagcacatgttaaacaa |
47000384 |
T |
|
| Q |
113 |
ctaaatataaata-tattttaaaaagaacaactttttaactttcaaataattgaatacatagtttccaagacaatatttcaannnnnnnattctttaaca |
211 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
47000383 |
ctaaatataaatattattttgaaaagaacaactttttaactttcaaataattgaatacatagtttctaagacaatatttcaatttttttattctttaaca |
47000284 |
T |
|
| Q |
212 |
acacgtgtctttagagtatttgttagcctttgtcataaaataacggactttgagctataccgagtcctatactcgtggagtcgtaggctttagccatcgt |
311 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
47000283 |
acacgtgtctttagagcatttgttaacctttgtcataaaataacggactttgagctataccgagtcctatactcgtggagtcgtaggctttagccatcat |
47000184 |
T |
|
| Q |
312 |
c--atcaaactcatgagtannnnnnngagcaaatcaaactcatgagtgttctcccttgtttct |
372 |
Q |
| |
|
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47000183 |
catatcaaactcatgagtatttttttgagcaaatcaaactcatgagtgttctcccttgtttct |
47000121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 191
Target Start/End: Complemental strand, 25749747 - 25749689
Alignment:
| Q |
133 |
aaaagaacaactttttaactttcaaataattgaatacatagtttccaagacaatatttc |
191 |
Q |
| |
|
||||||||| ||||||||||||||| ||| ||||||| | ||||||||| |||||||| |
|
|
| T |
25749747 |
aaaagaacacttttttaactttcaaaaaatagaatacacaatttccaagaaaatatttc |
25749689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 8329731 - 8329670
Alignment:
| Q |
130 |
ttaaaaagaacaactttttaactttcaaataattgaatacatagtttccaagacaatatttc |
191 |
Q |
| |
|
|||||||||||| | |||||||||||||| | | ||||||||| ||||||| | |||||||| |
|
|
| T |
8329731 |
ttaaaaagaacaccattttaactttcaaaaagtagaatacataatttccaaaataatatttc |
8329670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 35539035 - 35538973
Alignment:
| Q |
130 |
ttaaaaagaacaactttttaactttcaaataattgaatacatagtttccaagacaatatttca |
192 |
Q |
| |
|
|||||||||||| ||||||||||| ||| ||| |||||| ||||||||| ||||||||||| |
|
|
| T |
35539035 |
ttaaaaagaacacttttttaacttttaaaaaataaaatacacagtttccaaaacaatatttca |
35538973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University