View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15396_high_15 (Length: 292)
Name: NF15396_high_15
Description: NF15396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15396_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 55340586 - 55340842
Alignment:
| Q |
19 |
atatccaaaatacgtacgtggaagtagtcatgactcgtgtgatcttcacataactgtttcaattttgtgagggagttagccgtgtaatttctcgattttc |
118 |
Q |
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| T |
55340586 |
atattcaaaatacgtacgtggaagtagtcatgactcgtgtgatcttcacataactgtttcaattttgtgagggagttagccgtgtaatttctcgattttc |
55340685 |
T |
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| Q |
119 |
attcaactgttcaagtttacacttcgcgtatctcttaggcgcaattgtacacattgagctttgagataatagtagctagacatggatttggattctctga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55340686 |
attcaactgttcaagtttacacttcgcgtatctcttaggcgcaattgtacacattgagctttgagataatagtagctagacatggatttggattctctga |
55340785 |
T |
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| Q |
219 |
agttgcaattctagcttttgtagatctcaatagttggatgaaggttgggcgatttgt |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
55340786 |
agttgcaattctagcttttgtagatctcaatagttggatgaaggttgggcaatttgt |
55340842 |
T |
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