View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15396_high_20 (Length: 246)
Name: NF15396_high_20
Description: NF15396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15396_high_20 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 16470494 - 16470265
Alignment:
| Q |
17 |
tatttccaatttgttttcttctttttatcattaattaagatttacaacaatggtatttagacacgtcatattctttaatgcatcatttatctccatctat |
116 |
Q |
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| T |
16470494 |
tatttccaatttgttttcttctttttatcattaattaagatttacaacaatggtatttagacacatcatattctttaatacatcatttatctccatctat |
16470395 |
T |
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| Q |
117 |
ctcttcctatcatcttctcttttaaggttgaagatgtttattcaaatagggttatcccagtacataaagtttgaattggttgaagtttcttatgcgaggt |
216 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16470394 |
ctcttcctatcattttctcttttaaggttgaagatgtttattcaaatagggttatcccagtacataaagtttgaattggttgaagtttcttatgcgaggt |
16470295 |
T |
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| Q |
217 |
ttaaggcctcaaggtattttatgtactctc |
246 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
16470294 |
ttaaggcctcaaggtattttatgtactctc |
16470265 |
T |
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