View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15396_high_5 (Length: 528)

Name: NF15396_high_5
Description: NF15396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15396_high_5
NF15396_high_5
[»] chr4 (19 HSPs)
chr4 (159-508)||(29129323-29129672)
chr4 (41-98)||(33997898-33997955)
chr4 (41-97)||(8747691-8747747)
chr4 (41-97)||(8749048-8749104)
chr4 (39-97)||(55780387-55780445)
chr4 (39-97)||(55844567-55844625)
chr4 (41-97)||(8896955-8897011)
chr4 (39-98)||(25011734-25011793)
chr4 (39-97)||(4433183-4433241)
chr4 (39-97)||(25011980-25012038)
chr4 (39-97)||(31435852-31435909)
chr4 (41-87)||(35615324-35615370)
chr4 (39-97)||(40168639-40168697)
chr4 (39-97)||(43793631-43793689)
chr4 (39-97)||(43793876-43793934)
chr4 (39-96)||(40169779-40169836)
chr4 (41-98)||(48157680-48157737)
chr4 (41-86)||(51362547-51362592)
chr4 (41-85)||(9942338-9942382)
[»] chr3 (20 HSPs)
chr3 (11-98)||(26722532-26722619)
chr3 (39-97)||(26723904-26723962)
chr3 (41-98)||(10584084-10584141)
chr3 (41-98)||(32829739-32829796)
chr3 (41-98)||(51219461-51219518)
chr3 (41-97)||(51220604-51220660)
chr3 (39-98)||(3329059-3329118)
chr3 (39-97)||(10743409-10743467)
chr3 (39-97)||(21326320-21326378)
chr3 (39-97)||(25179578-25179636)
chr3 (39-97)||(26628025-26628083)
chr3 (39-97)||(26628271-26628329)
chr3 (39-97)||(28154882-28154940)
chr3 (39-97)||(28173729-28173787)
chr3 (39-97)||(40836424-40836482)
chr3 (39-97)||(48907537-48907595)
chr3 (41-85)||(10083285-10083329)
chr3 (41-85)||(10190210-10190254)
chr3 (49-97)||(32831100-32831148)
chr3 (45-97)||(53157182-53157233)
[»] chr5 (8 HSPs)
chr5 (39-97)||(3597323-3597381)
chr5 (39-98)||(3598922-3598981)
chr5 (41-97)||(124531-124587)
chr5 (39-84)||(5033735-5033780)
chr5 (41-98)||(5504138-5504195)
chr5 (44-84)||(5034721-5034761)
chr5 (39-97)||(31055315-31055373)
chr5 (41-97)||(5502918-5502973)
[»] chr1 (16 HSPs)
chr1 (50-97)||(14512669-14512716)
chr1 (41-97)||(46312065-46312121)
chr1 (42-95)||(46524542-46524595)
chr1 (41-98)||(46525844-46525901)
chr1 (39-97)||(2425469-2425527)
chr1 (39-97)||(28920897-28920955)
chr1 (39-96)||(43706655-43706712)
chr1 (39-98)||(43706899-43706958)
chr1 (39-97)||(3616799-3616857)
chr1 (41-87)||(12075271-12075317)
chr1 (39-97)||(16972096-16972154)
chr1 (39-97)||(24196261-24196319)
chr1 (39-97)||(46432216-46432274)
chr1 (39-96)||(50334719-50334776)
chr1 (49-97)||(3000223-3000271)
chr1 (45-97)||(14204837-14204889)
[»] chr7 (10 HSPs)
chr7 (41-98)||(35080282-35080339)
chr7 (45-97)||(9805432-9805484)
chr7 (48-97)||(23621990-23622039)
chr7 (41-97)||(35081603-35081659)
chr7 (39-97)||(20636619-20636677)
chr7 (39-97)||(20638491-20638549)
chr7 (39-97)||(39182179-39182237)
chr7 (39-97)||(48176208-48176266)
chr7 (39-84)||(48175976-48176021)
chr7 (39-79)||(26385507-26385547)
[»] chr6 (7 HSPs)
chr6 (41-94)||(22417661-22417714)
chr6 (39-98)||(10120174-10120233)
chr6 (39-98)||(26710553-26710612)
chr6 (39-97)||(20409067-20409125)
chr6 (39-97)||(24051009-24051067)
chr6 (39-96)||(4013911-4013968)
chr6 (41-97)||(22418939-22418995)
[»] chr2 (12 HSPs)
chr2 (41-98)||(27553809-27553866)
chr2 (41-97)||(27552452-27552508)
chr2 (39-97)||(10851913-10851971)
chr2 (41-97)||(12812836-12812892)
chr2 (50-98)||(24192244-24192291)
chr2 (39-98)||(28851672-28851731)
chr2 (39-97)||(4587860-4587918)
chr2 (41-87)||(5470593-5470639)
chr2 (39-97)||(11175907-11175965)
chr2 (39-97)||(18538074-18538132)
chr2 (39-97)||(25884178-25884236)
chr2 (39-97)||(45413477-45413535)
[»] chr8 (5 HSPs)
chr8 (39-97)||(38612219-38612277)
chr8 (39-97)||(38613417-38613475)
chr8 (39-97)||(18881747-18881805)
chr8 (39-97)||(19392812-19392870)
chr8 (49-97)||(13883878-13883926)


Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 159 - 508
Target Start/End: Original strand, 29129323 - 29129672
Alignment:
Q  159 cccctaattgaaatccatttatttggaaaagaaaatagcagtatggtcactgcataaaatatttcgggcaaaagtttcaaaaaggatttcttaatttagt 258  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29129323 cccctaattgaaatccatttatttggaaaagaaagtagcagtatggtcactgcataaaatatttcgggcaaaagtttcaaaaaggatttcttaatttagt 29129422  T
Q  259 tgtccacttataggaatggaaatctcattttattatttttctgttatgaaagaagaaaaggtatatttaatttaaagaaattaaaatacaaagacagaga 358  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  29129423 tgtccacttataggaatggaaatctcattttattgtttttctgttatgaaagaagaaaaagtatattcaatttaaagaaattaaaatacaaagacagaga 29129522  T
Q  359 agggtaaaacatcctcctaatgaagctatacatggtgaagaaagttgaaacataaaagagaaatgcccatactagaaatataaaacttcagtgttagtta 458  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29129523 agggtaaaacatcctcctaatgaagctatacatggtgaagaaagttgaaacataaaagagaaatgcccatactagaaatacaaaacttcagtgttagtta 29129622  T
Q  459 ctgaaccctttttggccataatttaaatatgttgtagcaatgagagccat 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29129623 ctgaaccctttttggccataatttaaatatgttgtagcaatgagagccat 29129672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 33997898 - 33997955
Alignment:
Q  41 tagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcca 98  Q
    ||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  33997898 tagggggtcaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcca 33997955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 8747747 - 8747691
Alignment:
Q  41 tagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    ||||||||||||||||||||||| | ||||||| |||| ||||||||||||||||||    
T  8747747 tagggggccaaaatcgcaacattggcaaacttaaggggtcaaaactgtagtttagcc 8747691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 8749048 - 8749104
Alignment:
Q  41 tagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    ||||||||||||||||||||||| | ||||||| |||| ||||| ||||||||||||    
T  8749048 tagggggccaaaatcgcaacattggcaaacttaaggggtcaaaagtgtagtttagcc 8749104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 55780445 - 55780387
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    ||||||||||||||||||||||||| | ||||||| ||||| |||| || |||||||||    
T  55780445 aatagggggccaaaatcgcaacatttgaaaacttaaggggcgaaaaatgaagtttagcc 55780387  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 55844625 - 55844567
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    ||||||||||||||||||||||||| | ||||||| ||||| |||| || |||||||||    
T  55844625 aatagggggccaaaatcgcaacatttgaaaacttaaggggcgaaaaatgaagtttagcc 55844567  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 8896955 - 8897011
Alignment:
Q  41 tagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||| ||||||||| |||||| | |||||||||| | ||||||||||||||||||    
T  8896955 taggggaccaaaatcgtaacattggcaaacttagggagtcaaaactgtagtttagcc 8897011  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 25011793 - 25011734
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcca 98  Q
    |||||||||||||||||||||||||   ||||||||||| | |||| || ||||||||||    
T  25011793 aatagggggccaaaatcgcaacattttgaaacttaggggacgaaaagtggagtttagcca 25011734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 4433241 - 4433183
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||| |||||||||||||||||||||  |||| |||||||| |||| || |||||||||    
T  4433241 aataaggggccaaaatcgcaacattatgaaacatagggggcgaaaagtgcagtttagcc 4433183  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 25011980 - 25012038
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||||||||||||| |||||||||  |||| |||||||| |||| || |||||||||    
T  25011980 aatagggggccaaaattgcaacattatgaaacatagggggcgaaaagtgcagtttagcc 25012038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 31435852 - 31435909
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    ||||||||| ||||||||||||||| | |||| || ||| |||||||||||||||||||    
T  31435852 aatagggggtcaaaatcgcaacattggcaaacataaggg-ccaaaactgtagtttagcc 31435909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 35615370 - 35615324
Alignment:
Q  41 tagggggccaaaatcgcaacattagtaaacttagggggccaaaactg 87  Q
    |||||||||||||||||||| |||| ||| ||||||||| |||||||    
T  35615370 tagggggccaaaatcgcaactttagaaaagttagggggctaaaactg 35615324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 40168697 - 40168639
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||||||||||||||||| ||||   ||| |||||||| |||||||| |||||||||    
T  40168697 aatagggggccaaaatcgcaccattgtaaaagttagggggtcaaaactgcagtttagcc 40168639  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 43793689 - 43793631
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||||||||||||||||||||||   |||| |||||||| |||| || |||||||||    
T  43793689 aatagggggccaaaatcgcaacattttaaaacatagggggcgaaaagtgcagtttagcc 43793631  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 43793876 - 43793934
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||||||||||||||||||||||   ||||||||| ||| |||| || |||||||||    
T  43793876 aatagggggccaaaatcgcaacattttgaaacttaggcggcaaaaagtggagtttagcc 43793934  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 40169779 - 40169836
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagc 96  Q
    |||||||||||||||||||| ||||   ||| |||||||| |||||||| ||||||||    
T  40169779 aatagggggccaaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagc 40169836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 48157680 - 48157737
Alignment:
Q  41 tagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcca 98  Q
    |||||||||||||||||| | |||  ||| |||||||| |||||||| ||||||||||    
T  48157680 tagggggccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcca 48157737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 51362592 - 51362547
Alignment:
Q  41 tagggggccaaaatcgcaacattagtaaacttagggggccaaaact 86  Q
    |||||||||||||||||||| |||| ||| ||||||||| ||||||    
T  51362592 tagggggccaaaatcgcaactttagaaaagttagggggctaaaact 51362547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 9942382 - 9942338
Alignment:
Q  41 tagggggccaaaatcgcaacattagtaaacttagggggccaaaac 85  Q
    ||||||||||||||| ||||||| | | |||||||||||||||||    
T  9942382 tagggggccaaaatcacaacatttggatacttagggggccaaaac 9942338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 26722619 - 26722532
Alignment:
Q  11 cataggggaccaaaattgtcannnnnnnaatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcca 98  Q
    |||||||||||||||||||||       ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26722619 cataggggaccaaaattgtcatttttttaatagggggccaaaatcgcaacattggtaaacttagggggccaaaactgtagtttagcca 26722532  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 26723904 - 26723962
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26723904 aatagggggccaaaattgcaacattagtaaacttagggggccaaaactgtagtttagcc 26723962  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 10584084 - 10584141
Alignment:
Q  41 tagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcca 98  Q
    ||||||||||||||||||||||| | |||||||||||  |||||||||||||||||||    
T  10584084 tagggggccaaaatcgcaacattggcaaacttaggggatcaaaactgtagtttagcca 10584141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 32829796 - 32829739
Alignment:
Q  41 tagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcca 98  Q
    ||||||||||||||||||| ||| | |||||||||||| |||||||||||||||||||    
T  32829796 tagggggccaaaatcgcaaaattggcaaacttagggggtcaaaactgtagtttagcca 32829739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 51219518 - 51219461
Alignment:
Q  41 tagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcca 98  Q
    |||||||||||||| ||||||||   ||||||||| || |||||||||||||||||||    
T  51219518 tagggggccaaaattgcaacattgacaaacttaggaggtcaaaactgtagtttagcca 51219461  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 51220604 - 51220660
Alignment:
Q  41 tagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||||| ||||||||||||||   ||||||| |||| ||||||||||||||||||    
T  51220604 tagggggctaaaatcgcaacattgacaaacttaaggggtcaaaactgtagtttagcc 51220660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 3329059 - 3329118
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcca 98  Q
    |||||||||||||||||||||||||   |||||||| |||| |||| || ||||||||||    
T  3329059 aatagggggccaaaatcgcaacattttgaaacttagagggcgaaaagtgaagtttagcca 3329118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 10743467 - 10743409
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||||||||||||||||||||||   ||||||||||||| ||||  | |||||||||    
T  10743467 aatagggggccaaaatcgcaacattttaaaacttagggggcgaaaagaggagtttagcc 10743409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 21326378 - 21326320
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||||| ||||||| |||| ||| ||||||||| |||| ||||| ||||||||||||    
T  21326378 aataggggaccaaaattgcaatattggtaaacttaaggggtcaaaagtgtagtttagcc 21326320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 25179636 - 25179578
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||||||||||||||||||||||   |||||||| |||| |||| || |||||||||    
T  25179636 aatagggggccaaaatcgcaacattttaaaacttagagggcgaaaagtgaagtttagcc 25179578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 26628083 - 26628025
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||||||||||||| ||||||||   |||| |||||||| |||| ||||||||||||    
T  26628083 aatagggggccaaaattgcaacattttgaaacatagggggcgaaaagtgtagtttagcc 26628025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 26628271 - 26628329
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||||||||||||||||||||||   |||||||| |||| |||| || |||||||||    
T  26628271 aatagggggccaaaatcgcaacattttgaaacttagagggcgaaaaatgaagtttagcc 26628329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 28154940 - 28154882
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||||||||||||| ||||||||   |||| |||||||| |||| ||||||||||||    
T  28154940 aatagggggccaaaattgcaacattttgaaacatagggggcgaaaagtgtagtttagcc 28154882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 28173787 - 28173729
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    ||||||||||||||||||||||||||  |||| |||||||| |||| || | |||||||    
T  28173787 aatagggggccaaaatcgcaacattatgaaacatagggggcgaaaagtgcactttagcc 28173729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 40836424 - 40836482
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    ||||||||| |||||||||||||||   ||||||||||||| |||| || |||||||||    
T  40836424 aatagggggtcaaaatcgcaacattttaaaacttagggggcgaaaaatgcagtttagcc 40836482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 48907537 - 48907595
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||||||||||||||||||||||   |||||||| |||| |||| || |||||||||    
T  48907537 aatagggggccaaaatcgcaacattttgaaacttagagggcgaaaagtgaagtttagcc 48907595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 10083329 - 10083285
Alignment:
Q  41 tagggggccaaaatcgcaacattagtaaacttagggggccaaaac 85  Q
    ||||||||||||||| ||||||| | ||||||||||||| |||||    
T  10083329 tagggggccaaaatcacaacatttgaaaacttagggggcgaaaac 10083285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 10190254 - 10190210
Alignment:
Q  41 tagggggccaaaatcgcaacattagtaaacttagggggccaaaac 85  Q
    ||||||||||||||| ||||||| | ||||||||||||| |||||    
T  10190254 tagggggccaaaatcacaacatttgaaaacttagggggcgaaaac 10190210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 32831100 - 32831148
Alignment:
Q  49 caaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||||||||||||   |||| ||||||| ||||||||||||||||||    
T  32831100 caaaatcgcaacattgacaaacatagggggtcaaaactgtagtttagcc 32831148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 53157182 - 53157233
Alignment:
Q  45 gggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||| |||||||||||| | ||||||| |||| ||||||||||||||||||    
T  53157182 gggccagaatcgcaacattggcaaactta-ggggtcaaaactgtagtttagcc 53157233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 3597381 - 3597323
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3597381 aataaggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 3597323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 3598922 - 3598981
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcca 98  Q
    ||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||    
T  3598922 aatagggggccaaaatcgcaacattggtaaatttaggggaccaaaactgtagtttagcca 3598981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 124531 - 124587
Alignment:
Q  41 tagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    ||||||||||||||||||||||| | ||||||| | || ||||||||||||||||||    
T  124531 tagggggccaaaatcgcaacattggcaaacttaagaggtcaaaactgtagtttagcc 124587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 5033780 - 5033735
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaa 84  Q
    |||| ||||||||||||||||||||  |||||||||||||||||||    
T  5033780 aataaggggccaaaatcgcaacatttttaaacttagggggccaaaa 5033735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 5504138 - 5504195
Alignment:
Q  41 tagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcca 98  Q
    ||||||| ||||||||||||||| | ||||||| | || |||||||||||||||||||    
T  5504138 tagggggtcaaaatcgcaacattggcaaacttaagaggtcaaaactgtagtttagcca 5504195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 5034721 - 5034761
Alignment:
Q  44 ggggccaaaatcgcaacattagtaaacttagggggccaaaa 84  Q
    ||||||||||||||||||||  |||||||||||||||||||    
T  5034721 ggggccaaaatcgcaacatttttaaacttagggggccaaaa 5034761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 31055373 - 31055315
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||||||||||||| |||||||||  |||| |||||||| |||| || |||||||||    
T  31055373 aatagggggccaaaattgcaacattatgaaacatagggggcgaaaagtgcagtttagcc 31055315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 5502973 - 5502918
Alignment:
Q  41 tagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||||||||||| |||||||| | |||||||  ||| ||||||||||||||||||    
T  5502973 tagggggccaaaattgcaacattggcaaactta-agggtcaaaactgtagtttagcc 5502918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 14512669 - 14512716
Alignment:
Q  50 aaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14512669 aaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 14512716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 46312121 - 46312065
Alignment:
Q  41 tagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||    
T  46312121 tagggggccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 46312065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 46524595 - 46524542
Alignment:
Q  42 agggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttag 95  Q
    ||||| ||||||| |||||||| |||||||||||||||||||||||||||||||    
T  46524595 aggggaccaaaattgcaacattggtaaacttagggggccaaaactgtagtttag 46524542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 46525844 - 46525901
Alignment:
Q  41 tagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcca 98  Q
    |||| |||||||||||||||||| | |||||||||||||||||||||||| |||||||    
T  46525844 taggaggccaaaatcgcaacattggcaaacttagggggccaaaactgtagattagcca 46525901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 2425469 - 2425527
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    ||||||||||||||||||||||||||  |||| |||||||| |||| || |||||||||    
T  2425469 aatagggggccaaaatcgcaacattatgaaacatagggggcaaaaagtgcagtttagcc 2425527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 28920897 - 28920955
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||||||||||||||||||||||   ||||||||||||| |||| || |||||||||    
T  28920897 aatagggggccaaaatcgcaacattttgaaacttagggggcgaaaagtgaagtttagcc 28920955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 43706712 - 43706655
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagc 96  Q
    ||||||||||||||||||||||||||  |||| |||||||| |||| || ||||||||    
T  43706712 aatagggggccaaaatcgcaacattatgaaacatagggggcgaaaagtgcagtttagc 43706655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 43706899 - 43706958
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcca 98  Q
    |||||||||||||||||||||||||   ||| ||||||||| |||| || ||||||||||    
T  43706899 aatagggggccaaaatcgcaacattttaaaaattagggggcaaaaagtggagtttagcca 43706958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 3616857 - 3616799
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||||||||||||||||||||||   |||||||| |||| |||| || |||||||||    
T  3616857 aatagggggccaaaatcgcaacattttgaaacttagagggcgaaaagtgaagtttagcc 3616799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 12075271 - 12075317
Alignment:
Q  41 tagggggccaaaatcgcaacattagtaaacttagggggccaaaactg 87  Q
    |||||||||||||||||||| |  |||||| ||||||||||||||||    
T  12075271 tagggggccaaaatcgcaacttctgtaaacatagggggccaaaactg 12075317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 16972096 - 16972154
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||||||| ||||||||||||||   ||||||||||||| |||| || |||||||||    
T  16972096 aatagggggctaaaatcgcaacattttaaaacttagggggcgaaaagtgcagtttagcc 16972154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 24196319 - 24196261
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    ||||| |||||||||||||||||||   ||||||||||||| |||| || |||||||||    
T  24196319 aatagagggccaaaatcgcaacattttgaaacttagggggcgaaaagtggagtttagcc 24196261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 46432274 - 46432216
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    ||||||||||||||||||||||||||  |||| |||||||| |||| || | |||||||    
T  46432274 aatagggggccaaaatcgcaacattatgaaacatagggggcgaaaagtgcactttagcc 46432216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 50334776 - 50334719
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagc 96  Q
    |||||||||||||||| ||||||||   ||||||||||||| |||| || ||||||||    
T  50334776 aatagggggccaaaattgcaacattttaaaacttagggggcgaaaagtggagtttagc 50334719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 3000223 - 3000271
Alignment:
Q  49 caaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    ||||||||||||||||  ||| ||| |||| ||||||||||||||||||    
T  3000223 caaaatcgcaacattaacaaaattaaggggtcaaaactgtagtttagcc 3000271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 14204889 - 14204837
Alignment:
Q  45 gggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||||||||||| ||||   |||| || |||||||||||||||||||||||    
T  14204889 gggccaaaatcgcagcattgtcaaacataaggggccaaaactgtagtttagcc 14204837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 35080339 - 35080282
Alignment:
Q  41 tagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcca 98  Q
    |||||| |||||||||||||||| | |||||||||||| |||||||||||||||||||    
T  35080339 taggggaccaaaatcgcaacattggcaaacttagggggtcaaaactgtagtttagcca 35080282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 9805432 - 9805484
Alignment:
Q  45 gggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    ||||||||||||||||||| | |||||||||||| ||||||||||||||||||    
T  9805432 gggccaaaatcgcaacattggcaaacttagggggtcaaaactgtagtttagcc 9805484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 23621990 - 23622039
Alignment:
Q  48 ccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||||||||||||| | ||||||||| |||||||||||||||||||||    
T  23621990 ccaaaatcgcaacattggcaaacttaggaggccaaaactgtagtttagcc 23622039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 35081603 - 35081659
Alignment:
Q  41 tagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    ||||| |||||||||||||||||   |||||||||||| ||||||||||||||||||    
T  35081603 tagggcgccaaaatcgcaacattgacaaacttagggggtcaaaactgtagtttagcc 35081659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 20636677 - 20636619
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||||||||||||||||||||||   |||||||| |||| |||| || |||||||||    
T  20636677 aatagggggccaaaatcgcaacattttaaaacttagagggcaaaaagtgaagtttagcc 20636619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 20638549 - 20638491
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||||||||||||||||||||||   |||||||| |||| |||| || |||||||||    
T  20638549 aatagggggccaaaatcgcaacattttaaaacttagagggcaaaaagtgaagtttagcc 20638491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 39182179 - 39182237
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    ||||||||| |||||| ||||||||  |||||||||||||| |||| || |||||||||    
T  39182179 aatagggggtcaaaattgcaacatttttaaacttagggggcgaaaagtgcagtttagcc 39182237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 48176208 - 48176266
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||||||||||||||||||||||   ||||||||||||| |||| |  |||||||||    
T  48176208 aatagggggccaaaatcgcaacattttgaaacttagggggcgaaaagtagagtttagcc 48176266  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 48176021 - 48175976
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaa 84  Q
    ||||||||||||||||||||||||||  |||| |||||||| ||||    
T  48176021 aatagggggccaaaatcgcaacattatgaaacatagggggcgaaaa 48175976  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 26385507 - 26385547
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggc 79  Q
    |||||||||||||||||||||||||   |||||||||||||    
T  26385507 aatagggggccaaaatcgcaacattttgaaacttagggggc 26385547  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 22417714 - 22417661
Alignment:
Q  41 tagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagttta 94  Q
    |||||||||||||||| |||||||| |||||||||||| |||||||||||||||    
T  22417714 tagggggccaaaatcgtaacattagcaaacttagggggtcaaaactgtagttta 22417661  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 10120233 - 10120174
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcca 98  Q
    ||||||||  |||||||||||||||   |||||||||||||||||| ||| |||||||||    
T  10120233 aataggggatcaaaatcgcaacattgacaaacttagggggccaaaattgttgtttagcca 10120174  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 26710553 - 26710612
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcca 98  Q
    |||||||||||||||||||||||||   |||||||| |||| |||| || ||||||||||    
T  26710553 aatagggggccaaaatcgcaacattttgaaacttagagggcgaaaagtgaagtttagcca 26710612  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 20409125 - 20409067
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||||||||||||||||| ||||   ||| |||||||| |||||||| |||||||||    
T  20409125 aatagggggccaaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagcc 20409067  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 24051067 - 24051009
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||||||||||||||||||||||   |||||||| |||| |||| || |||||||||    
T  24051067 aatagggggccaaaatcgcaacattttgaaacttagagggcgaaaagtgaagtttagcc 24051009  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 4013911 - 4013968
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagc 96  Q
    |||||||||||||||||||||||||   ||||||||||| | |||| || ||||||||    
T  4013911 aatagggggccaaaatcgcaacattttgaaacttaggggacgaaaagtgcagtttagc 4013968  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 22418939 - 22418995
Alignment:
Q  41 tagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||| | ||||||| ||||||   ||||||||||||||||||| |||||||||||    
T  22418939 taggggacaaaaatcgtaacattgacaaacttagggggccaaaaccgtagtttagcc 22418995  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 27553809 - 27553866
Alignment:
Q  41 tagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcca 98  Q
    |||| |||||||||||||||||||| ||||||||||||  ||||||||||||||||||    
T  27553809 taggaggccaaaatcgcaacattagcaaacttagggggttaaaactgtagtttagcca 27553866  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 27552508 - 27552452
Alignment:
Q  41 tagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    ||||| ||||||||||||||||| | ||| |||||||| ||||||||||||||||||    
T  27552508 tagggagccaaaatcgcaacattggcaaatttagggggtcaaaactgtagtttagcc 27552452  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 10851971 - 10851913
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||||||  ||||||||||||||  |||| |||||||| ||||||||||||||||||    
T  10851971 aatagggggttaaaatcgcaacattgataaagttagggggtcaaaactgtagtttagcc 10851913  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 12812892 - 12812836
Alignment:
Q  41 tagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    ||||||||||||||| ||||||||| ||||||| | || ||||||||||| ||||||    
T  12812892 tagggggccaaaatctcaacattagcaaacttaagaggtcaaaactgtagcttagcc 12812836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 24192291 - 24192244
Alignment:
Q  50 aaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcca 98  Q
    |||||||||||||||| |||||| |||| ||||||||||||||||||||    
T  24192291 aaaatcgcaacattagcaaactttgggg-ccaaaactgtagtttagcca 24192244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 28851672 - 28851731
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcca 98  Q
    ||||||||| |||||||||||||||   ||| |||||||| |||||||| ||||||||||    
T  28851672 aatagggggtcaaaatcgcaacattgtgaaagttagggggtcaaaactgcagtttagcca 28851731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 4587918 - 4587860
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||||||||||||||||||||||   ||||||||||||| |||| ||  ||||||||    
T  4587918 aatagggggccaaaatcgcaacattttgaaacttagggggcgaaaagtggtgtttagcc 4587860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 5470593 - 5470639
Alignment:
Q  41 tagggggccaaaatcgcaacattagtaaacttagggggccaaaactg 87  Q
    |||||||||||||||||||| |||| ||| ||||||||| |||||||    
T  5470593 tagggggccaaaatcgcaactttaggaaagttagggggctaaaactg 5470639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 11175965 - 11175907
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||||||||||||||||||||||   |||||||| |||| |||| || |||||||||    
T  11175965 aatagggggccaaaatcgcaacattttgaaacttagagggcgaaaagtgaagtttagcc 11175907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 18538074 - 18538132
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||||||||||||||||||||||   |||||||| |||| |||| || |||||||||    
T  18538074 aatagggggccaaaatcgcaacattttgaaacttagagggcgaaaagtgaagtttagcc 18538132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 25884236 - 25884178
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||||||||||||||||||||||   ||||||||||||| |||  || |||||||||    
T  25884236 aatagggggccaaaatcgcaacattttaaaacttagggggcgaaatgtgcagtttagcc 25884178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 45413477 - 45413535
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||||||||||||||||| ||||   ||| |||||||| |||||||| |||||||||    
T  45413477 aatagggggccaaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagcc 45413535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 38612277 - 38612219
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||||||||||||||||||||||   ||| |||||||| |||||||| |||||||||    
T  38612277 aatagggggccaaaatcgcaacattgtgaaagttagggggtcaaaactgcagtttagcc 38612219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 38613417 - 38613475
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||||||||||||||||||||||   ||| |||||||| |||||||| |||||||||    
T  38613417 aatagggggccaaaatcgcaacattgtgaaagttagggggtcaaaactgcagtttagcc 38613475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 18881747 - 18881805
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    ||||||||| |||||| |||||||||  ||||||||||||| |||| ||| ||||||||    
T  18881747 aatagggggtcaaaattgcaacattataaaacttagggggcgaaaagtgttgtttagcc 18881805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 19392812 - 19392870
Alignment:
Q  39 aatagggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||||||||||||||||||||||   |||||||| |||| |||| || |||||||||    
T  19392812 aatagggggccaaaatcgcaacattttgaaacttagagggcgaaaagtgaagtttagcc 19392870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 13883878 - 13883926
Alignment:
Q  49 caaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 97  Q
    |||||||||||||||   ||||||| |||| ||||||||||||||||||    
T  13883878 caaaatcgcaacattgacaaacttaaggggtcaaaactgtagtttagcc 13883926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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