View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15396_low_1 (Length: 770)
Name: NF15396_low_1
Description: NF15396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15396_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 697; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 697; E-Value: 0
Query Start/End: Original strand, 18 - 738
Target Start/End: Complemental strand, 42212410 - 42211690
Alignment:
| Q |
18 |
gaaacaagattctaatcactgtacctggtacggtgtcaactgttccaaagttgatgaaagagttcaatctctaaccttacggggacttggcctctcaggt |
117 |
Q |
| |
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|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42212410 |
gaaacaagattctaatcattgtacctggtatggtgtcaactgttccaaagttgatgaaagagttcaatctctaaccttacggggacttggcctctctggt |
42212311 |
T |
|
| Q |
118 |
aaactaccctctaacctctccaacctcacttaccttcattcacttgacctttccaataacactttccatggccaaattccattccaattttctcatctct |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42212310 |
aaactaccctctaacctctccaacctcacttaccttcattcacttgacctttccaataacacttttcatggccaaattccattccaattttctcatctct |
42212211 |
T |
|
| Q |
218 |
cactcctcaatgtcattcaattagctatgaacgatctcaatggtacacttccaccacaattgggtcaactccataatctacagagtttagacttttctgt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42212210 |
cactcctcaatgtcattcaattagctatgaacgatctcaatggcacacttccaccacaattgggtcaactccataatctacaaagtttagacttttctgt |
42212111 |
T |
|
| Q |
318 |
caataatctcactggtaaaattccttcaacctttggcaatctcttatctctcaagaatctttccatggcaaggaacatgcttgagggtgaaattccaagt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42212110 |
caataatctcactggtaaaattccttcaacctttggcaatctcttatctctcaagaatctttccatggcaaggaacatgcttgagggtgaaattccaagt |
42212011 |
T |
|
| Q |
418 |
gaattgggcaatctccacaatctttcaagacttcaactctcagagaataacttcaccggcaagcttcctacttctatcttcaacttatcttccttagttt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42212010 |
gaattgggcaatctccacaatctttcaagacttcaactctcagagaataacttcaccggcaagcttcctacttctatcttcaacttatcttccttagttt |
42211911 |
T |
|
| Q |
518 |
tcttatccctcacacagaacaatctatcaggcgagttgccacaaaatttcggcgaagcttttccgaatatagggacacttgctttggcaaccaatagatt |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42211910 |
tcttatccctcacacagaacaatctatcaggcgagttgccacaaaatttcggcgaagcttttccgaatatagggacacttgctttggcaaccaatagatt |
42211811 |
T |
|
| Q |
618 |
tgaaggggtaattcctagttccatatccaattcatcacatcttcaaattattgatctttctaacaataggtttcatgggccaatgcctcttttcaacaac |
717 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42211810 |
tgaaggggtaattcctagttccatatccaattcatcacatcttcaaattattgatctttctaacaataggtttcatgggccaatgcctcttttcaacaac |
42211711 |
T |
|
| Q |
718 |
ttgaaaaacctcactcatttg |
738 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
42211710 |
ttgaaaaacctcactcatttg |
42211690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 681; E-Value: 0
Query Start/End: Original strand, 18 - 758
Target Start/End: Complemental strand, 42224626 - 42223886
Alignment:
| Q |
18 |
gaaacaagattctaatcactgtacctggtacggtgtcaactgttccaaagttgatgaaagagttcaatctctaaccttacggggacttggcctctcaggt |
117 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||| |
|
|
| T |
42224626 |
gaaacaagattctaatcattgtacctggtatggtgtcaactgttccaaagttgatgaaagagttcaatctctaaccttatcaggacttaaactctctggt |
42224527 |
T |
|
| Q |
118 |
aaactaccctctaacctctccaacctcacttaccttcattcacttgacctttccaataacactttccatggccaaattccattccaattttctcatctct |
217 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
42224526 |
aaactaccccctaacctctccaacctcacttaccttcattcacttgacctttccaataacacttttcatggccaaattccattccaattttctcatctct |
42224427 |
T |
|
| Q |
218 |
cactcctcaatgtcattcaattagctatgaacgatctcaatggtacacttccaccacaattgggtcaactccataatctacagagtttagacttttctgt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42224426 |
cactcctcaatgtcattcaattagctatgaacgatctcaatggcacacttccaccacaattgggtcaactccataatctacagagtttagacttttctgt |
42224327 |
T |
|
| Q |
318 |
caataatctcactggtaaaattccttcaacctttggcaatctcttatctctcaagaatctttccatggcaaggaacatgcttgagggtgaaattccaagt |
417 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42224326 |
caataatctcacaggtcaaattccttcaacctttggcaatctcttatctctcaagaatctttccatggcaaggaacatgcttgagggtgaaattccaagt |
42224227 |
T |
|
| Q |
418 |
gaattgggcaatctccacaatctttcaagacttcaactctcagagaataacttcaccggcaagcttcctacttctatcttcaacttatcttccttagttt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42224226 |
gaattgggcaatctccacaatctttcaagacttcaactctcagagaataacttcaccggcaagcttcctacttctatcttcaacttatcttccttagttt |
42224127 |
T |
|
| Q |
518 |
tcttatccctcacacagaacaatctatcaggcgagttgccacaaaatttcggcgaagcttttccgaatatagggacacttgctttggcaaccaatagatt |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42224126 |
tcttatccctcacacagaacaatctatcaggcgagttgccacaaaatttcggcgaagcttttccgaatatagggacacttgctttggcaaccaatagatt |
42224027 |
T |
|
| Q |
618 |
tgaaggggtaattcctagttccatatccaattcatcacatcttcaaattattgatctttctaacaataggtttcatgggccaatgcctcttttcaacaac |
717 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42224026 |
tgaaggggtaatccctagttccatatccaattcatcacatcttcaaattattgatctttctaacaataggtttcatgggccaatgcctcttttcaacaac |
42223927 |
T |
|
| Q |
718 |
ttgaaaaacctcactcatttgtatctcagtaagaataatct |
758 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42223926 |
ttgaaaaacctcactcatttgtatctcagtaagaataatct |
42223886 |
T |
|
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