View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15396_low_11 (Length: 409)
Name: NF15396_low_11
Description: NF15396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15396_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 39727667 - 39728059
Alignment:
| Q |
1 |
caaggtatcatcattagttacactcttgtcaat-gaggatttatgtacaagcactaatgtgattatatagaataaggctggctaataattcttggtaaag |
99 |
Q |
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| T |
39727667 |
caaggtatcatcattggttacactcttgtcaattgaggatttatgtacaagcactaatgtgattatatagaataaggctgcctaataattcttggtaaag |
39727766 |
T |
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| Q |
100 |
aattctgttcaatagttacatatatagctaaatatgtaccgagaatattctaatcctaaatgggcgccaattgcatatttacaactctcccttcaagcaa |
199 |
Q |
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| T |
39727767 |
aattctgttcaatagttacatatatagctaaatatgtaccgagaatattcta-tcctaaatgggcgccaattgcatatttacaactctcccttcaagcaa |
39727865 |
T |
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| Q |
200 |
tgtcaatcattccctgcttgcaagatcttgaaaccactttgttggaagtcctcccttagtgaaaacatttgcgaattgaagtccaaaagaccaggtcact |
299 |
Q |
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| T |
39727866 |
tgtcaatcattccctgcttgcaagatcttgaaaccactttgttggaagtcctcccttagtgaaaacatttgcgaattgaagtccaaaagaccaggtcact |
39727965 |
T |
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| Q |
300 |
atctaatttctccttgatgaagggtcaatgtatctatatgtatttgattctatcatgcgtgttgggttacatgcattgctaatggaagaagtat |
393 |
Q |
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| T |
39727966 |
atctaatttctccttgatgaagggtcaatgtatctatatgtatttgattctatcatgcgtgttgggttacatgcattgctaatggaagaagtat |
39728059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 39866307 - 39866265
Alignment:
| Q |
33 |
tgaggatttatgtacaagcactaatgtgattatatagaataag |
75 |
Q |
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| T |
39866307 |
tgaggattgatgtacaagcactaatgtgattatatagaataag |
39866265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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