View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15396_low_12 (Length: 406)
Name: NF15396_low_12
Description: NF15396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15396_low_12 |
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| [»] scaffold0638 (1 HSPs) |
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| [»] scaffold0451 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 391
Target Start/End: Complemental strand, 38260481 - 38260099
Alignment:
| Q |
18 |
cttgttacaagtaattataagataaacatttatgttcttttta-caaacaaaataaacatttatgtt---------taattatcaacttgtataagcaaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
38260481 |
cttgttacaagtaattataagataaacatttatgttttttttaacaaacaaaataaacatttatgttataagcccttaattatcaacttgtataaacaaa |
38260382 |
T |
|
| Q |
108 |
agacttaatctaattgttgtccctacaaagacgataagcagggatggcaattagattattggctctaggcatagtaagaccaaaatcctctgtcatatcc |
207 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38260381 |
-gacttaatctaattgttgtccctgcaaagacgataagcagggatggcaattagattattggctctaggcatagtaagaccaaaatcctctgtcatatcc |
38260283 |
T |
|
| Q |
208 |
aaatcacttggtaacatatgattaggcaatttccaatcaaagcaatgcacaagttgagccaccaccaaacgaatcatagttagacctaattgtaatccag |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38260282 |
aaatcacttggtaacatatgattaggcaatttccaatcaaagcaatgcacaagttgagccaccaccaaacgaatcacagttagacctaattgtaatccag |
38260183 |
T |
|
| Q |
308 |
gacaacctcttctacctgagccaaatggtatgagctgaaaatcacgtcctttaacatctatattgtttccttcaaacctctctg |
391 |
Q |
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| T |
38260182 |
gacaacctcttctacctgagccaaatggtatgagctgaaaatcacgtcctttaacatctatattgtttccttcaaacctctctg |
38260099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 134 - 391
Target Start/End: Complemental strand, 38263327 - 38263070
Alignment:
| Q |
134 |
aaagacgataagcagggatggcaattagattattggctctaggcatagtaagaccaaaatcctctgtcatatccaaatcacttggtaacatatgattagg |
233 |
Q |
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|||| ||||||| || |||||| ||| || ||| || |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38263327 |
aaaggcgataagtgggaatggcagttaaatgatttgccctaggcatagtaagtccaaactcctctgtcatatccaaatcacttggtaacatatgattagg |
38263228 |
T |
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| Q |
234 |
caatttccaatcaaagcaatgcacaagttgagccaccaccaaacgaatcatagttagacctaattgtaatccaggacaacctcttctacctgagccaaat |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||| |||||||| || |||||| |
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| T |
38263227 |
caatttccaatcaaagcaatgcacaagttgagccaccaccaaacgaatcacagttaggcctaattgcaatccaggacaaccccttctaccagacccaaat |
38263128 |
T |
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| Q |
334 |
ggtatgagctgaaaatcacgtcctttaacatctatattgtttccttcaaacctctctg |
391 |
Q |
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| T |
38263127 |
ggtatgagctgaaaatcacgtcctctaacatctatattgctttcttcaaatctctctg |
38263070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0638 (Bit Score: 136; Significance: 8e-71; HSPs: 1)
Name: scaffold0638
Description:
Target: scaffold0638; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 138 - 389
Target Start/End: Complemental strand, 7144 - 6893
Alignment:
| Q |
138 |
acgataagcagggatggcaattagattattggctctaggcatagtaagaccaaaatcctctgtcatatccaaatcacttggtaacatatgattaggcaat |
237 |
Q |
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||||||| ||||||| |||||||||| |||||||||| ||||||||| |||||| |||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
7144 |
acgataaacagggattgcaattagatgattggctctacgcatagtaacaccaaatgcctctgccatgtccaaatcacttggtaacatatgattaggcaat |
7045 |
T |
|
| Q |
238 |
ttccaatcaaagcaatgcacaagttgagccaccaccaaacgaatcatagttagacctaattgtaatccaggacaacctcttctacctgagccaaatggta |
337 |
Q |
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|| |||||||||||||||||||||| || ||||||||||| | |||||||||||| ||||| ||||||||||| || ||||| || |||| |||||||| |
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| T |
7044 |
ttaaaatcaaagcaatgcacaagttgggctaccaccaaacgcaccatagttagacccaattgcaatccaggacatccccttcttccagagctaaatggta |
6945 |
T |
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| Q |
338 |
tgagctgaaaatcacgtcctttaacatctatattgtttccttcaaacctctc |
389 |
Q |
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| T |
6944 |
taagttgaaaatcatgtcctccaacatctatgttgtttccttcaaatctctc |
6893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 5e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 134 - 389
Target Start/End: Complemental strand, 27413703 - 27413448
Alignment:
| Q |
134 |
aaagacgataagcagggatggcaattagattattggctctaggcatagtaagaccaaaatcctctgtcatatccaaatcacttggtaacatatgattagg |
233 |
Q |
| |
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||||||||||| |||| | ||||| | || |||||||||||||||||||| |||||| |||| ||||| |||||||||||||||||||||| |||||| |
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| T |
27413703 |
aaagacgataaacaggaagtgcaatcaaatgattggctctaggcatagtaataccaaatgcctcagtcatgtccaaatcacttggtaacatatcattagg |
27413604 |
T |
|
| Q |
234 |
caatttccaatcaaagcaatgcacaagttgagccaccaccaaacgaatcatagttagacctaattgtaatccaggacaacctcttctacctgagccaaat |
333 |
Q |
| |
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|||||| |||||||||||||||||| ||| |||||||||||||| | |||||||||||| || || |||||||||||||| ||||| || ||||||||| |
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| T |
27413603 |
taatttcaaatcaaagcaatgcacaatttgggccaccaccaaacgcaccatagttagacccaaatgcaatccaggacaaccccttcttccagagccaaat |
27413504 |
T |
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| Q |
334 |
ggtatgagctgaaaatcacgtcctttaacatctatattgtttccttcaaacctctc |
389 |
Q |
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||||| |||||||| ||| ||||| ||||||||| |||||||||||||| ||||| |
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|
| T |
27413503 |
ggtataagctgaaagtcatgtcctccaacatctatgttgtttccttcaaatctctc |
27413448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0451 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: scaffold0451
Description:
Target: scaffold0451; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 136 - 389
Target Start/End: Original strand, 6735 - 6988
Alignment:
| Q |
136 |
agacgataagcagggatggcaattagattattggctctaggcatagtaagaccaaaatcctctgtcatatccaaatcacttggtaacatatgattaggca |
235 |
Q |
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||||||||| ||||||| |||||||||| |||||||||||||||||||| |||||| |||||||| ||||| |||||||||||||||| |||||||| |
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| T |
6735 |
agacgataaacagggattgcaattagatgattggctctaggcatagtaacaccaaatgattctgtcatgtccaagtcacttggtaacatatcattaggca |
6834 |
T |
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| Q |
236 |
atttccaatcaaagcaatgcacaagttgagccaccaccaaacgaatcatagttagacctaattgtaatccaggacaacctcttctacctgagccaaatgg |
335 |
Q |
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|||| |||||||||||||||||||||| || ||| ||||||| | |||||||||||||||||| ||||||||||| || ||||| || ||||||||||| |
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| T |
6835 |
atttaaaatcaaagcaatgcacaagttgggctaccgccaaacgcaccatagttagacctaattgcaatccaggacatccccttcttccagagccaaatgg |
6934 |
T |
|
| Q |
336 |
tatgagctgaaaatcacgtcctttaacatctatattgtttccttcaaacctctc |
389 |
Q |
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||| || ||||| | | ||| ||||||||| |||||||||||||| ||||| |
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| T |
6935 |
tataagatgaaagtgttgccctccaacatctatgttgtttccttcaaatctctc |
6988 |
T |
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