View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15396_low_14 (Length: 379)
Name: NF15396_low_14
Description: NF15396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15396_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 42275158 - 42275522
Alignment:
| Q |
1 |
tattggtacgatgtatgnnnnnnnattgttttttcactatactcccctgctttggttccatactcaaccatagttactgtttccttgtcttccgttatcc |
100 |
Q |
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| T |
42275158 |
tattggtacgatgtatgctcccccattgttttttcactatactcccctgctttggttccatactcaaccatagtttctgtttccttgtcttccgttatcc |
42275257 |
T |
|
| Q |
101 |
atgacactctcatcttatctttccccaccaatgaaatatgcacctacaagcaaaaatatgtcacaaacaacgtcactaatcttaaaatgaccaatttaat |
200 |
Q |
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| T |
42275258 |
atgacactctcatcttatctttccccaccaatgaaatatgcacctacaagcaaaaaaatgtcacaaacaacgtcactaatcttaaaatgaccaatttaat |
42275357 |
T |
|
| Q |
201 |
gtatgattatagtcaaatttgttttgaaatttttcactaaatgagtttgtgactggttggtttatttagtgtgacaaaatatatgaatttatcaatgagt |
300 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42275358 |
gtatgattatagtcaaatttgttttgaattttttcactaaatgagtttgtgac----tggtttatttagtgtgacaaaatatatgaatttatcaatgagt |
42275453 |
T |
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| Q |
301 |
taaggtaactaaaatttataatgaacctgttgaggttctgaattggagcgttgatggggagtgatgatg |
369 |
Q |
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| T |
42275454 |
taaggtaactaaaatttataatgaacctgttgaggttctgaattggagcgttgatggggagtgatgatg |
42275522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 26275458 - 26275401
Alignment:
| Q |
88 |
tcttccgttatccatgacactctcatcttatctttccccaccaatgaaatatgcacct |
145 |
Q |
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| T |
26275458 |
tcttcagttatccatgatactctcatatgatctttccctaccaacgaaatgtgcacct |
26275401 |
T |
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