View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15396_low_15 (Length: 377)

Name: NF15396_low_15
Description: NF15396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15396_low_15
NF15396_low_15
[»] chr2 (7 HSPs)
chr2 (1-328)||(32706083-32706409)
chr2 (257-358)||(32718272-32718373)
chr2 (257-358)||(32724677-32724778)
chr2 (35-112)||(32718574-32718651)
chr2 (35-112)||(32724979-32725056)
chr2 (190-243)||(32718419-32718472)
chr2 (190-243)||(32724824-32724877)
[»] chr6 (2 HSPs)
chr6 (30-114)||(14903439-14903523)
chr6 (257-333)||(14903644-14903720)
[»] chr5 (4 HSPs)
chr5 (285-368)||(2999378-2999461)
chr5 (30-114)||(2999658-2999748)
chr5 (30-77)||(7432420-7432467)
chr5 (190-255)||(2999481-2999553)
[»] chr8 (1 HSPs)
chr8 (32-76)||(39851723-39851767)
[»] chr4 (1 HSPs)
chr4 (32-76)||(44476235-44476279)


Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 32706409 - 32706083
Alignment:
Q  1 ctagtgttggaaacacgcttctcttcttctattcaatgatttaaatatgtaatgaagctagaaattgcatcaagctagctctctgagttaaataaataat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32706409 ctagtgttggaaacacgcttctcttcttctattcaatgatttaaatatgtaatgaagctagaaattgcatcaagctagctctctgagttaaataaataat 32706310  T
Q  101 gatctcatgcacaagaataccactcactcaatgattgatatgtaggtaaaacattaaacaccgacaatcttaaactatcttgcaatgagctaaacaaaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32706309 gatctcatgcacaagaataccactcactcaatgattgatatgtaggtaaa-cattaaacaccgacaatcttaaactatcatgcaatgagctaaacaaaat 32706211  T
Q  201 ctgaataagatgtctatcaacactaacactcaacaaggtgagatattttaagaatcgaaattttagaatagagttcaacttgatataaaacgtctacaca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  32706210 ctgaataagatgtctatcaacactaacactcaacaaggtgagatattttaagaattgtaattttagaatagagttcaacttgatataaaacgtctacaca 32706111  T
Q  301 gaggaatacaagaaagctgactccaaaa 328  Q
    |||||||| |||||||||||||| ||||    
T  32706110 gaggaataaaagaaagctgactctaaaa 32706083  T

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Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 257 - 358
Target Start/End: Complemental strand, 32718373 - 32718272
Alignment:
Q  257 gaaattttagaatagagttcaacttgatataaaacgtctacacagaggaatacaagaaagctgactccaaaaccaaccggctactaaaatcctagctcta 356  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||| |||||||||| ||||| |||||| || |||||||||||    
T  32718373 gaaattttagaatagagttcaacttgatgtaaaacgtctacacagaggaatacagaaaagcagactccaaaaacaaccagctactgaactcctagctcta 32718274  T
Q  357 ca 358  Q
    ||    
T  32718273 ca 32718272  T

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Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 257 - 358
Target Start/End: Complemental strand, 32724778 - 32724677
Alignment:
Q  257 gaaattttagaatagagttcaacttgatataaaacgtctacacagaggaatacaagaaagctgactccaaaaccaaccggctactaaaatcctagctcta 356  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||| |||||||||| ||||| |||||| || |||||||||||    
T  32724778 gaaattttagaatagagttcaacttgatgtaaaacgtctacacagaggaatacagaaaagcagactccaaaaacaaccagctactgaactcctagctcta 32724679  T
Q  357 ca 358  Q
    ||    
T  32724678 ca 32724677  T

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Target: chr2; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 32718651 - 32718574
Alignment:
Q  35 aatgatttaaatatgtaatgaagctagaaattgcatcaagctagctctctgagttaaataaataatgatctcatgcac 112  Q
    ||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||| | ||||||| ||||||||||||    
T  32718651 aatgatttaaatatgtaatcaaggtagaaattgcatcaagccagctctctgagttcactaaataacgatctcatgcac 32718574  T

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Target: chr2; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 32725056 - 32724979
Alignment:
Q  35 aatgatttaaatatgtaatgaagctagaaattgcatcaagctagctctctgagttaaataaataatgatctcatgcac 112  Q
    ||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||| | ||||||| ||||||||||||    
T  32725056 aatgatttaaatatgtaatcaaggtagaaattgcatcaagccagctctctgagttcactaaataacgatctcatgcac 32724979  T

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Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 32718472 - 32718419
Alignment:
Q  190 ctaaacaaaatctgaataagatgtctatcaacactaacactcaacaaggtgaga 243  Q
    ||||||||||| |||||||||||||||||| |||||||||| ||||||||||||    
T  32718472 ctaaacaaaatgtgaataagatgtctatcaccactaacactaaacaaggtgaga 32718419  T

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Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 32724877 - 32724824
Alignment:
Q  190 ctaaacaaaatctgaataagatgtctatcaacactaacactcaacaaggtgaga 243  Q
    ||||||||||| |||||||||||||||||| |||||||||| ||||||||||||    
T  32724877 ctaaacaaaatgtgaataagatgtctatcaccactaacactaaacaaggtgaga 32724824  T

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Target: chr6 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 14903439 - 14903523
Alignment:
Q  30 tattcaatgatttaaatatgtaatgaagctagaaattgcatcaagctagctctctgagttaaataaataatgatctcatgcacaa 114  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14903439 tattcagtgatttaaatatgtaatgaagctagaaattgcatcaagctagctctctgagttaaataaataatgatctcatgcacaa 14903523  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 257 - 333
Target Start/End: Original strand, 14903644 - 14903720
Alignment:
Q  257 gaaattttagaatagagttcaacttgatataaaacgtctacacagaggaatacaagaaagctgactccaaaaccaac 333  Q
    |||||||||||||| ||||||||||||||||||   |||||| ||||||||||||||||| ||||||||||||||||    
T  14903644 gaaattttagaataaagttcaacttgatataaataatctacatagaggaatacaagaaagttgactccaaaaccaac 14903720  T

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Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 285 - 368
Target Start/End: Complemental strand, 2999461 - 2999378
Alignment:
Q  285 ataaaacgtctacacagaggaatacaagaaagctgactccaaaaccaaccggctactaaaatcctagctctacatcttcatctc 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| || ||||||||||||||||||||    
T  2999461 ataaaacgtctacacagaggaatacaagaaagctgactccaaaaccaactgactactaaactcgtagctctacatcttcatctc 2999378  T

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Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 2999748 - 2999658
Alignment:
Q  30 tattcaatgatttaaatatgtaatgaagctagaaattgcatcaagctagctctctgagttaaat------aaataatgatctcatgcacaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||    
T  2999748 tattcaatgatttaaatatgtaatgaagctagaaattgcatcaagctagctctctgagttaaataaaataaaataatgatctcatgcacaa 2999658  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 7432467 - 7432420
Alignment:
Q  30 tattcaatgatttaaatatgtaatgaagctagaaattgcatcaagcta 77  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  7432467 tattcaatgatttcaatatgtaatgaagctacaaattgcatcaagcta 7432420  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 190 - 255
Target Start/End: Complemental strand, 2999553 - 2999481
Alignment:
Q  190 ctaaacaaaatctgaataagatgtctat-------caacactaacactcaacaaggtgagatattttaagaat 255  Q
    ||||||||||||||||||||||||||||       || ||||||||||||||||||||||||||||| |||||    
T  2999553 ctaaacaaaatctgaataagatgtctattaccattcaccactaacactcaacaaggtgagatattttgagaat 2999481  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 39851767 - 39851723
Alignment:
Q  32 ttcaatgatttaaatatgtaatgaagctagaaattgcatcaagct 76  Q
    ||||||||||||| ||||||||||||||| ||||| |||||||||    
T  39851767 ttcaatgatttaactatgtaatgaagctaaaaattacatcaagct 39851723  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 44476279 - 44476235
Alignment:
Q  32 ttcaatgatttaaatatgtaatgaagctagaaattgcatcaagct 76  Q
    ||||||||||||| ||||||||| ||||| |||||||||| ||||    
T  44476279 ttcaatgatttaactatgtaatgcagctacaaattgcatccagct 44476235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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