View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15396_low_16 (Length: 365)
Name: NF15396_low_16
Description: NF15396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15396_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 11 - 349
Target Start/End: Complemental strand, 20868305 - 20867964
Alignment:
| Q |
11 |
caaaggaggaatatatcatttgtgtcggcaaacatcatttgagttttaattttttatgagctaactcgatttacttaaggatacgaattacatgggattt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
20868305 |
caaaggaggaatatatcatttgtgtcggcaaacatcatttgagttttaatttttcatgagctaactcgatttacttaaggatacggattacatgggattt |
20868206 |
T |
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| Q |
111 |
gctaattgaacgtttcatttttcatgacctaatacagactgctg---aaactcctaaccataaacttaatcttagtggctcttacagaccatgcacggaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
20868205 |
gctaattgaacgtttcatttttcatgacctaatacagactgctgctgaaactcctaaccataaacataatcttagtggctcttacagaccatgcacaaaa |
20868106 |
T |
|
| Q |
208 |
aaactaacatacatgcatcgaatattcacaactcaaacacccatagttttgttctatattcccctttataaagactcacctcaaatagctagaacatcct |
307 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20868105 |
aaactaacagacatgcatcgaatattcacaactcaaacacccatagttttgttctatattcccctttataaagactcacctcaaatagctagaacatcct |
20868006 |
T |
|
| Q |
308 |
acctcagatcaattcaaataaacatcgaaacaatgtacctaa |
349 |
Q |
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| T |
20868005 |
acctcagatcaattcaaataaacatcgaaacaatgtacctaa |
20867964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 50 - 194
Target Start/End: Complemental strand, 3408524 - 3408380
Alignment:
| Q |
50 |
tgagttttaattttttatgagctaactcgatttacttaaggatacgaattacatggga-tttgctaattgaacgtttcatttttcatgacctaatacaga |
148 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||| ||||||||||| |
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| T |
3408524 |
tgagttttaatttttcatgagctaactcgatttacttaaggatacgaattacatgggaatttgctaattga-cgtttcatttctcatgtcctaatacaga |
3408426 |
T |
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| Q |
149 |
ctgctgaaactcctaaccataaacttaatcttagtggctcttacag |
194 |
Q |
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| T |
3408425 |
ctgctgaaactcctaaccataaacttaatcttagtggctcttacag |
3408380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 186 - 271
Target Start/End: Complemental strand, 3403781 - 3403696
Alignment:
| Q |
186 |
ctcttacagaccatgcacggaaaaactaacatacatgcatcgaatattcacaactcaaacacccatagttttgttctatattcccc |
271 |
Q |
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| T |
3403781 |
ctcttacagaccatgcacggaaaaactaacagacatgcattgaatattcacaactcaaacacccatagttttgttctataatcccc |
3403696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 267 - 331
Target Start/End: Complemental strand, 3402542 - 3402478
Alignment:
| Q |
267 |
tcccctttataaagactcacctcaaatagctagaacatcctacctcagatcaattcaaataaaca |
331 |
Q |
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|
| T |
3402542 |
tcccctttataaagactcacctcaaatagctagtgcatcctacctcaaatcaattcaaataaaca |
3402478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 145 - 331
Target Start/End: Original strand, 7129934 - 7130120
Alignment:
| Q |
145 |
cagactgctgaaactcctaaccataaacttaatcttagtggctcttacagaccatgcacggaaaaactaacatacatgcatcgaatattcacaactcaaa |
244 |
Q |
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||||||||||||| |||| |||| |||||||||||||||||||||||| |||||||||| | |||||||||| ||||||| |||||||||||||||||| |
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| T |
7129934 |
cagactgctgaaattcctcaccacaaacttaatcttagtggctcttactgaccatgcactgcaaaactaacagacatgcaaagaatattcacaactcaaa |
7130033 |
T |
|
| Q |
245 |
cacccatagttttgttctatattcccctttataaagactcacctcaaatagctagaacatcctacctcagatcaattcaaataaaca |
331 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||| |
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| T |
7130034 |
cacccatagttttgttctctcatcccctttataaagactcacctcaaatagctagtgaatcctacctcaaatcaattaaaataaaca |
7130120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 44738061 - 44738021
Alignment:
| Q |
11 |
caaaggaggaatatatcatttgtgtcggcaaacatcatttg |
51 |
Q |
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| T |
44738061 |
caaaggaggaatatatcatttgtgtcggcaaacatcatttg |
44738021 |
T |
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