View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15396_low_19 (Length: 329)
Name: NF15396_low_19
Description: NF15396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15396_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 16 - 320
Target Start/End: Complemental strand, 6592531 - 6592227
Alignment:
| Q |
16 |
ctctctcgggatcacattgatgtcactgatattgatcggtggactctttatctaaccagatggcaggttaaagagtttgtgttagaaatctggaaaaacc |
115 |
Q |
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| T |
6592531 |
ctctctcgggatcacattgatgtcactgatattgatcggtggactctttatctaaccagatggcaggttaaagagtttgtgttagaaatctggaaaaacc |
6592432 |
T |
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| Q |
116 |
cagtccaacgctataaaataccttcatggttattttcttgtcaaagtttgcatcatttagaattattagaatgctggcttataccaccatcaacatttca |
215 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6592431 |
cagaccaacgctataaaataccttcatggttattttcttgtcaaagtttgcatcatttagaattattagaatgctggcttataccaccatcaacatttca |
6592332 |
T |
|
| Q |
216 |
aggtttcaagaacttgaagagtcttgatctgcaatatgttacattgactaaagatgctgttgaaaacttaatatccagctgccttctgcttgaacgattg |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6592331 |
aggtttcaagaacttgaagagtcttgatctgcaatatgttacattgactaaagatgctgttgaaaacttaatatccagctgccttatgcttgaacgattg |
6592232 |
T |
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| Q |
316 |
atatt |
320 |
Q |
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||||| |
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| T |
6592231 |
atatt |
6592227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 43 - 316
Target Start/End: Complemental strand, 6601753 - 6601486
Alignment:
| Q |
43 |
gatattgatcggtggactctttatctaaccagatggcaggttaaagagtttgtgttagaaatctggaaaaacccagtccaacgctataaaataccttcat |
142 |
Q |
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| T |
6601753 |
gatattgatcgatggactcttcatctaaccagaaggcctgttaaagagtttgtgctggaaatctggaaa------gggcaacgctataaaataccttcat |
6601660 |
T |
|
| Q |
143 |
ggttattttcttgtcaaagtttgcatcatttagaattattagaatgctggcttataccaccatcaacatttcaaggtttcaagaacttgaagagtcttga |
242 |
Q |
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| T |
6601659 |
gcttattttcttgtcaaggtttacatcatttagaattatttaactgttggcttataccaccatcaacatttcaaggattcaggaacttgaagagtcttga |
6601560 |
T |
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| Q |
243 |
tctgcaatatgttacattgactaaagatgctgttgaaaacttaatatccagctgccttctgcttgaacgattga |
316 |
Q |
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| T |
6601559 |
tctgcaacatgttaccttgtctcaagatgcttttgaaaacttgatatctacttgccctttgcttgaacgattga |
6601486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 242
Target Start/End: Original strand, 3361842 - 3361962
Alignment:
| Q |
122 |
aacgctataaaataccttcatggttattttcttgtcaaagtttgcatcatttagaattattagaatgctggcttataccaccatcaacatttcaaggttt |
221 |
Q |
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|||||||||| || |||| || ||||| |||||||||||||| ||||||||||||||| | || ||||||| ||| ||| |||| ||| |||| || |
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| T |
3361842 |
aacgctataagatcccttggtgcttattctcttgtcaaagtttacatcatttagaattaaaatgctgttggcttaaacctccaacaacgtttgaaggctt |
3361941 |
T |
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| Q |
222 |
caagaacttgaagagtcttga |
242 |
Q |
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| T |
3361942 |
caagaacttgaaaagtcttga |
3361962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 177
Target Start/End: Original strand, 3340636 - 3340690
Alignment:
| Q |
123 |
acgctataaaataccttcatggttattttcttgtcaaagtttgcatcatttagaa |
177 |
Q |
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| T |
3340636 |
acgctataaaataccttgctgcttattctcttgtcaaagtttgcaacatttagaa |
3340690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 3349433 - 3349491
Alignment:
| Q |
40 |
actgatattgatcggtggactctttatctaaccagatggcaggttaaagagtttgtgtt |
98 |
Q |
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| T |
3349433 |
actgatattgatcggtggattcttcatctaaccggaagacatattaaagagtttgtgtt |
3349491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 298
Target Start/End: Complemental strand, 3218339 - 3218247
Alignment:
| Q |
206 |
caacatttcaaggtttcaagaacttgaagagtcttgatctgcaatatgttacattgactaaagatgctgttgaaaacttaatatccagctgcc |
298 |
Q |
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| T |
3218339 |
caacgtttaaaggcttcaagaacttgaaaagtcttgaactatatcaggttacaatggctcaagatgcttttgaaaacttgatatccggctgcc |
3218247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 21237664 - 21237717
Alignment:
| Q |
127 |
tataaaataccttcatggttattttcttgtcaaagtttgcatcatttagaatta |
180 |
Q |
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| T |
21237664 |
tataagataccttggtgcttattctcttgtcaaagtttacatcatttagaatta |
21237717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 20923600 - 20923653
Alignment:
| Q |
121 |
caacgctataaaataccttcatggttattttcttgtcaaagtttgcatcattta |
174 |
Q |
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| T |
20923600 |
caacgctataacataccttggtgcttattctcttgtcaaagtttacatcattta |
20923653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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