View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15396_low_2 (Length: 589)
Name: NF15396_low_2
Description: NF15396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15396_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 1905025 - 1904819
Alignment:
| Q |
1 |
tgcattaaaaatatacacaaatgaaccctttaacaatcattgaaatcagaaatgagcaaaagaactaaactcaaataagttgaaaaatcataaattgtgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1905025 |
tgcattaaaaatatacacaaatgaacactttaacaatcattgaaatcagaaatgagcaaaagaactaaactcaaataagttgaaaaatcataaattgtgc |
1904926 |
T |
|
| Q |
101 |
tggttggttgaggatgaaaagcaacatatggtttggagacctagcttcgacgagtttatggaaacaatttaatttcataatctctccgggaagattatat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1904925 |
tggttggttgaggatgaaaagcaacatatggtttggagacctagcttcgacgagtttatggaaacaatttaatttcataatctctccgggaagattataa |
1904826 |
T |
|
| Q |
201 |
aacaatc |
207 |
Q |
| |
|
||||||| |
|
|
| T |
1904825 |
aacaatc |
1904819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 1909258 - 1909052
Alignment:
| Q |
1 |
tgcattaaaaatatacacaaatgaaccctttaacaatcattgaaatcagaaatgagcaaaagaactaaactcaaataagttgaaaaatcataaattgtgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1909258 |
tgcattaaaaatatacacaaatgaacactttaacaatcattgaaatcagaaatgagcaaaagaactaaactcaaataagttgaaaaatcataaattgtgc |
1909159 |
T |
|
| Q |
101 |
tggttggttgaggatgaaaagcaacatatggtttggagacctagcttcgacgagtttatggaaacaatttaatttcataatctctccgggaagattatat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1909158 |
tggttggttgaggatgaaaagcaacatatggtttggagacctagcttcgacgagtttatggaaacaatttaatttcataatctctccgggaagattataa |
1909059 |
T |
|
| Q |
201 |
aacaatc |
207 |
Q |
| |
|
||||||| |
|
|
| T |
1909058 |
aacaatc |
1909052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 274 - 429
Target Start/End: Complemental strand, 1904759 - 1904604
Alignment:
| Q |
274 |
atcactcatacaataagcatttatgctataaatgtttagctaaattgtttattcaaacacggtctaaaccggataacataccgtataataggtaattagc |
373 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
1904759 |
atcactcatacgataagcatttatgctataaatgtttagctaagttgtttattcaaacacgatctaaacgcgataacatgccgtataataggtaattagc |
1904660 |
T |
|
| Q |
374 |
taactcttaattttccacatatatcttccgcaggctccacgtggtggtgtggttgt |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1904659 |
taactcttaattttccacatatatcttccgcaggctccacgtggtggtgtggttgt |
1904604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 274 - 429
Target Start/End: Complemental strand, 1908992 - 1908837
Alignment:
| Q |
274 |
atcactcatacaataagcatttatgctataaatgtttagctaaattgtttattcaaacacggtctaaaccggataacataccgtataataggtaattagc |
373 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
1908992 |
atcactcatacgataagcatttatgctataaatgtttagctaagttgtttattcaaacacgatctaaacgcgataacatgccgtataataggtaattagc |
1908893 |
T |
|
| Q |
374 |
taactcttaattttccacatatatcttccgcaggctccacgtggtggtgtggttgt |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1908892 |
taactcttaattttccacatatatcttccgcaggctccacgtggtggtgtggttgt |
1908837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 493 - 553
Target Start/End: Complemental strand, 1904540 - 1904480
Alignment:
| Q |
493 |
tgtggctaatagttcaccaactgaactgaagttcggttatcatcgttgtgattcagtttgg |
553 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1904540 |
tgtgactaatagttcaccaactgaattgaagttcggttatcatcgttgtgattcagtttgg |
1904480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 493 - 553
Target Start/End: Complemental strand, 1908773 - 1908713
Alignment:
| Q |
493 |
tgtggctaatagttcaccaactgaactgaagttcggttatcatcgttgtgattcagtttgg |
553 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1908773 |
tgtgactaatagttcaccaactgaattgaagttcggttatcatcgttgtgattcagtttgg |
1908713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University