View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15396_low_20 (Length: 296)

Name: NF15396_low_20
Description: NF15396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15396_low_20
NF15396_low_20
[»] chr4 (8 HSPs)
chr4 (1-280)||(12075211-12075488)
chr4 (1-141)||(28860778-28860916)
chr4 (11-140)||(34301799-34301926)
chr4 (88-122)||(27066640-27066674)
chr4 (88-122)||(27066834-27066868)
chr4 (88-122)||(27087547-27087581)
chr4 (82-122)||(12355230-12355270)
chr4 (82-122)||(54027796-54027836)
[»] chr3 (4 HSPs)
chr3 (1-141)||(18765606-18765744)
chr3 (13-137)||(8566007-8566129)
chr3 (13-137)||(31809155-31809277)
chr3 (11-120)||(31973506-31973615)
[»] scaffold0303 (1 HSPs)
scaffold0303 (3-141)||(14186-14322)
[»] chr6 (4 HSPs)
chr6 (1-141)||(17752278-17752416)
chr6 (1-69)||(22736544-22736612)
chr6 (13-137)||(31029121-31029243)
chr6 (88-122)||(30141038-30141072)
[»] chr1 (4 HSPs)
chr1 (1-141)||(10771206-10771344)
chr1 (1-140)||(18122712-18122851)
chr1 (12-122)||(21701497-21701607)
chr1 (81-137)||(41117182-41117236)
[»] chr5 (5 HSPs)
chr5 (1-141)||(27493242-27493380)
chr5 (35-121)||(40299909-40299995)
chr5 (82-122)||(29755047-29755087)
chr5 (81-122)||(16088575-16088616)
chr5 (78-141)||(26683466-26683527)
[»] chr7 (6 HSPs)
chr7 (11-118)||(3960091-3960198)
chr7 (11-140)||(30622519-30622646)
chr7 (12-137)||(15633222-15633345)
chr7 (12-122)||(32480221-32480331)
chr7 (13-137)||(47081677-47081799)
chr7 (13-122)||(8118824-8118933)
[»] chr8 (4 HSPs)
chr8 (13-137)||(35285027-35285149)
chr8 (11-122)||(34723876-34723987)
chr8 (58-140)||(20526242-20526322)
chr8 (12-122)||(37590061-37590171)
[»] chr2 (4 HSPs)
chr2 (12-122)||(27267912-27268022)
chr2 (73-141)||(10973633-10973699)
chr2 (82-119)||(14231032-14231069)
chr2 (78-122)||(11502328-11502372)
[»] scaffold1964 (1 HSPs)
scaffold1964 (82-141)||(1101-1158)
[»] scaffold0643 (1 HSPs)
scaffold0643 (82-122)||(1054-1094)


Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 12075488 - 12075211
Alignment:
Q  1 ataatcgaatattcaatacaattgagtataacataataaactacggaactaactaataatgtggcctctctaacgaaagtatgagctaccacattagctt 100  Q
    ||||||||| |||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||| || ||||||| ||||||| |||||||    
T  12075488 ataatcgaagattcaatacaattgggtataacataataaactactgaactagctaataatgtggcctctctaatgagagtatgacctaccacgttagctt 12075389  T
Q  101 atcgcctaacaaactccaccctcgagagttggaaaatttggctattgttaagaaatttaaaaagaatttatcttgagaatgatcggtaatgtaatagtgg 200  Q
    |||||||||||||||| | |   |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||    
T  12075388 atcgcctaacaaactctatct--gagagttggaaaatttggctattgttaagaaatttaaaaataatttatcttgagaatgatcagtaatgtagtagtgg 12075291  T
Q  201 caataataaaatcatcaacatggtggcatatcaagtgtcgacaagtgtcataaaaatgttcgtaacaaatgtcttgacat 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||    
T  12075290 caataataaaatcatcaacatggtggcatatcaagtgtcgacaagtgtcataaaaatgtttataacaagtgtcttgacat 12075211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 28860916 - 28860778
Alignment:
Q  1 ataatcgaatattcaatacaattgagtataacataataaactacggaactaactaataatgtggcctctctaacgaaagtatgagctaccacattagctt 100  Q
    |||||| || |||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||| ||| ||| |||||||||||||| ||||    
T  28860916 ataatcaaagattcaatacaattgagtatagcataataaactacggcactagctaataatgtggcctctctagcgagagtgtgagctaccacattggctt 28860817  T
Q  101 atcgcctaacaaactccaccctcgagagttggaaaatttgg 141  Q
     |||||||||||||||||||  ||||||||  |||||||||    
T  28860816 gtcgcctaacaaactccacc--cgagagttaaaaaatttgg 28860778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 140
Target Start/End: Complemental strand, 34301926 - 34301799
Alignment:
Q  11 attcaatacaattgagtataacataataaactacggaactaactaataatgtggcctctctaacgaaagtatgagctaccacattagcttatcgcctaac 110  Q
    |||||||||||||| ||||| ||||||||   |||| |||| ||| ||||||||||||| |  | | | ||||||||||| |||| | || |||||||||    
T  34301926 attcaatacaattgggtatagcataataagtaacgggactagctattaatgtggcctcttttgcaagattatgagctaccgcatttgtttgtcgcctaac 34301827  T
Q  111 aaactccaccctcgagagttggaaaatttg 140  Q
     |||||||||  ||||||||||||||||||    
T  34301826 gaactccacc--cgagagttggaaaatttg 34301799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 122
Target Start/End: Original strand, 27066640 - 27066674
Alignment:
Q  88 accacattagcttatcgcctaacaaactccaccct 122  Q
    ||||||||||||| |||||||||||||||||||||    
T  27066640 accacattagcttgtcgcctaacaaactccaccct 27066674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 122
Target Start/End: Original strand, 27066834 - 27066868
Alignment:
Q  88 accacattagcttatcgcctaacaaactccaccct 122  Q
    ||||||||||||| |||||||||||||||||||||    
T  27066834 accacattagcttgtcgcctaacaaactccaccct 27066868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 122
Target Start/End: Original strand, 27087547 - 27087581
Alignment:
Q  88 accacattagcttatcgcctaacaaactccaccct 122  Q
    ||||||||||||| |||||||||||||||||||||    
T  27087547 accacattagcttgtcgcctaacaaactccaccct 27087581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 12355270 - 12355230
Alignment:
Q  82 tgagctaccacattagcttatcgcctaacaaactccaccct 122  Q
    ||||| ||||||||| ||| |||||||||||||||||||||    
T  12355270 tgagccaccacattaccttgtcgcctaacaaactccaccct 12355230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 54027796 - 54027836
Alignment:
Q  82 tgagctaccacattagcttatcgcctaacaaactccaccct 122  Q
    ||||| ||||||||||||| |||||||| ||||||||||||    
T  54027796 tgagccaccacattagcttgtcgcctaaaaaactccaccct 54027836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 18765606 - 18765744
Alignment:
Q  1 ataatcgaatattcaatacaattgagtataacataataaactacggaactaactaataatgtggcctctctaacgaaagtatgagctaccacattagctt 100  Q
    ||||| ||| |||||||||||||| ||||||||||||||| ||||| |||| ||| |||||||||||||||| ||| |||||||||||||| ||| ||||    
T  18765606 ataatagaagattcaatacaattgggtataacataataaattacggcactagctattaatgtggcctctctagcgagagtatgagctaccaaattggctt 18765705  T
Q  101 atcgcctaacaaactccaccctcgagagttggaaaatttgg 141  Q
     |||||||||||||||||||  |||||||| ||||||||||    
T  18765706 gtcgcctaacaaactccacc--cgagagttagaaaatttgg 18765744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 137
Target Start/End: Complemental strand, 8566129 - 8566007
Alignment:
Q  13 tcaatacaattgagtataacataataaactacggaactaactaataatgtggcctctctaacgaaagtatgagctaccacattagcttatcgcctaacaa 112  Q
    |||||||||||| ||||| ||||||| ||  ||| |||| ||||  | ||||||||||   | | || |||||| ||| | ||||||| |||||||||||    
T  8566129 tcaatacaattgggtatatcataatagacagcgggactagctaaagacgtggcctctcgtgcaagagcatgagccaccgcgttagcttgtcgcctaacaa 8566030  T
Q  113 actccaccctcgagagttggaaaat 137  Q
    ||||||||||  |||||||||||||    
T  8566029 actccaccct--agagttggaaaat 8566007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 137
Target Start/End: Complemental strand, 31809277 - 31809155
Alignment:
Q  13 tcaatacaattgagtataacataataaactacggaactaactaataatgtggcctctctaacgaaagtatgagctaccacattagcttatcgcctaacaa 112  Q
    ||||||||||||  |||| ||||||||||  ||| |||| ||||  | ||||||||||   | | || |||||| ||| | || |||| |||||||||||    
T  31809277 tcaatacaattggatatatcataataaacggcgggactagctaaagacgtggcctctcgtgcaagaggatgagccaccgcgttggcttgtcgcctaacaa 31809178  T
Q  113 actccaccctcgagagttggaaaat 137  Q
    ||||||||||  |||||||||||||    
T  31809177 actccaccct--agagttggaaaat 31809155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 31973615 - 31973506
Alignment:
Q  11 attcaatacaattgagtataacataataaactacggaactaactaataatgtggcctctctaacgaaagtatgagctaccacattagcttatcgcctaac 110  Q
    |||||||||||||| ||||| ||||||||||  ||| |||| ||||  | ||||||||||   | | || |||||| ||| | || |||| |||||||||    
T  31973615 attcaatacaattgggtatatcataataaacggcgggactagctaaagacgtggcctctcgtgcaagagcatgagcaaccgcgttggcttgtcgcctaac 31973516  T
Q  111 aaactccacc 120  Q
    ||||||||||    
T  31973515 aaactccacc 31973506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0303 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0303
Description:

Target: scaffold0303; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 3 - 141
Target Start/End: Complemental strand, 14322 - 14186
Alignment:
Q  3 aatcgaatattcaatacaattgagtataacataataaactacggaactaactaataatgtggcctctctaacgaaagtatgagctaccacattagcttat 102  Q
    ||||||| |||||||||||||| |||||  |||||||||||||| |||| ||||||||||||||||||||  || ||| |||||||||||||| |||| |    
T  14322 aatcgaagattcaatacaattgggtataggataataaactacggcactagctaataatgtggcctctctagggacagtgtgagctaccacattggcttgt 14223  T
Q  103 cgcctaacaaactccaccctcgagagttggaaaatttgg 141  Q
    ||||||||||||||||||  |||||||| ||||||||||    
T  14222 cgcctaacaaactccacc--cgagagttagaaaatttgg 14186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 6e-34; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 17752278 - 17752416
Alignment:
Q  1 ataatcgaatattcaatacaattgagtataacataataaactacggaactaactaataatgtggcctctctaacgaaagtatgagctaccacattagctt 100  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||| || ||| ||  |||||||||||||| ||||    
T  17752278 ataatcgaagattcaatacaattgggtataacataataaactacggcactagctaataatgtggcctctgtagcgagagagtgagctaccacattggctt 17752377  T
Q  101 atcgcctaacaaactccaccctcgagagttggaaaatttgg 141  Q
     | ||| |||||||||||||  |||||||| ||||||||||    
T  17752378 gttgccaaacaaactccacc--cgagagttagaaaatttgg 17752416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 22736544 - 22736612
Alignment:
Q  1 ataatcgaatattcaatacaattgagtataacataataaactacggaactaactaataatgtggcctct 69  Q
    ||||| ||| |||||||||||||| ||||| ||||||||||||| | |||| |||||||||||||||||    
T  22736544 ataattgaagattcaatacaattgggtatagcataataaactacagcactagctaataatgtggcctct 22736612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 137
Target Start/End: Complemental strand, 31029243 - 31029121
Alignment:
Q  13 tcaatacaattgagtataacataataaactacggaactaactaataatgtggcctctctaacgaaagtatgagctaccacattagcttatcgcctaacaa 112  Q
    |||||||||||| ||||| ||||||| ||  ||| |||| ||||  | ||||||||||   | | ||||||||| |||   ||||||| |||||||||||    
T  31029243 tcaatacaattgggtatatcataatagacagcgggactagctaaggacgtggcctctcgtgcaagagtatgagccaccgtgttagcttgtcgcctaacaa 31029144  T
Q  113 actccaccctcgagagttggaaaat 137  Q
    ||||||||||  |||||||||||||    
T  31029143 actccaccct--agagttggaaaat 31029121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 122
Target Start/End: Original strand, 30141038 - 30141072
Alignment:
Q  88 accacattagcttatcgcctaacaaactccaccct 122  Q
    ||||||||||||| |||||||||||||||||||||    
T  30141038 accacattagcttgtcgcctaacaaactccaccct 30141072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 10771344 - 10771206
Alignment:
Q  1 ataatcgaatattcaatacaattgagtataacataataaactacggaactaactaataatgtggcctctctaacgaaagtatgagctaccacattagctt 100  Q
    ||||||||| |||||||||| ||| ||||| ||||||||||||||| |||| ||| |||||||| ||||||| ||| | |||||||||||||||| ||||    
T  10771344 ataatcgaagattcaatacagttgggtatagcataataaactacggcactagctattaatgtggtctctctagcgagaatatgagctaccacattggctt 10771245  T
Q  101 atcgcctaacaaactccaccctcgagagttggaaaatttgg 141  Q
     |||||||||||||||||||  |||||||| ||||||||||    
T  10771244 gtcgcctaacaaactccacc--cgagagttagaaaatttgg 10771206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 18122851 - 18122712
Alignment:
Q  1 ataatcgaatattcaatacaattgagtataacataata--aactacggaactaactaataatgtggcctctctaacgaaagtatgagctaccacattagc 98  Q
    ||||| ||| |||||||| ||||| ||||| |||||||  |||||||| |||| |||||||||||||||||||| ||| ||| ||||||||||||||       
T  18122851 ataattgaagattcaatataattgggtatagcataatataaactacggcactagctaataatgtggcctctctagcgagagtgtgagctaccacattgat 18122752  T
Q  99 ttatcgcctaacaaactccaccctcgagagttggaaaatttg 140  Q
    || |||||||| ||||||||||  |||||||| |||||||||    
T  18122751 ttgtcgcctaataaactccacc--cgagagttagaaaatttg 18122712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 21701497 - 21701607
Alignment:
Q  12 ttcaatacaattgagtataacataataaactacggaactaactaataatgtggcctctctaacgaaagtatgagctaccacattagcttatcgcctaaca 111  Q
    ||||||||||||||||||| ||||||||||  ||| |||| ||||  | ||||||||||     | || |||||| ||||| || |||||||||||||||    
T  21701497 ttcaatacaattgagtatatcataataaacggcgggactagctaaagacgtggcctctcgtgaaagagcatgagcaaccacgttggcttatcgcctaaca 21701596  T
Q  112 aactccaccct 122  Q
    |||||||||||    
T  21701597 aactccaccct 21701607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 41117236 - 41117182
Alignment:
Q  81 atgagctaccacattagcttatcgcctaacaaactccaccctcgagagttggaaaat 137  Q
    |||||| ||| |||| |||| |||||||||||||||||||  |||||||||||||||    
T  41117236 atgagcaacctcattggcttgtcgcctaacaaactccacc--cgagagttggaaaat 41117182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 27493380 - 27493242
Alignment:
Q  1 ataatcgaatattcaatacaattgagtataacataataaactacggaactaactaataatgtggcctctctaacgaaagtatgagctaccacattagctt 100  Q
    |||||| || |||||||||||||| ||||||||||||||||| ||| |||| ||||||| |||||||||    ||| |||||||||| | ||||| ||||    
T  27493380 ataatcaaagattcaatacaattgggtataacataataaactgcgggactagctaataacgtggcctcttctgcgagagtatgagctgctacattggctt 27493281  T
Q  101 atcgcctaacaaactccaccctcgagagttggaaaatttgg 141  Q
     |||| ||||||||||||||   ||||||||||||||||||    
T  27493280 gtcgcttaacaaactccacc--tgagagttggaaaatttgg 27493242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 121
Target Start/End: Complemental strand, 40299995 - 40299909
Alignment:
Q  35 aataaactacggaactaactaataatgtggcctctctaacgaaagtatgagctaccacattagcttatcgcctaacaaactccaccc 121  Q
    ||||||| ||||||||| | |  ||||||||||||   |||| ||||||||| ||||| || |||| ||||||||||||||||||||    
T  40299995 aataaacaacggaactagcgagaaatgtggcctcttctacgagagtatgagcaaccacgtttgcttgtcgcctaacaaactccaccc 40299909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 29755047 - 29755087
Alignment:
Q  82 tgagctaccacattagcttatcgcctaacaaactccaccct 122  Q
    ||||| ||||||||||||| |||||||||||||||||||||    
T  29755047 tgagccaccacattagcttgtcgcctaacaaactccaccct 29755087  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 16088616 - 16088575
Alignment:
Q  81 atgagctaccacattagcttatcgcctaacaaactccaccct 122  Q
    |||||| |||| |||||||| |||||||||||||||||||||    
T  16088616 atgagcaaccatattagcttgtcgcctaacaaactccaccct 16088575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 26683527 - 26683466
Alignment:
Q  78 agtatgagctaccacattagcttatcgcctaacaaactccaccctcgagagttggaaaatttgg 141  Q
    ||||||||| ||||||||| ||| ||||  |||||||||||||  |||||||||||||| ||||    
T  26683527 agtatgagccaccacattaacttgtcgcggaacaaactccacc--cgagagttggaaaacttgg 26683466  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 118
Target Start/End: Original strand, 3960091 - 3960198
Alignment:
Q  11 attcaatacaattgagtataacataataaactacggaactaactaataatgtggcctctctaacgaaagtatgagctaccacattagcttatcgcctaac 110  Q
    |||||||||||||||||||||||||||||   |||||| || |||||||||||| ||||||  | | | |||||||||||||||| |||| | |||||||    
T  3960091 attcaatacaattgagtataacataataagtaacggaattagctaataatgtggtctctcttgcaagattatgagctaccacatttgcttgtagcctaac 3960190  T
Q  111 aaactcca 118  Q
     |||||||    
T  3960191 gaactcca 3960198  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 140
Target Start/End: Original strand, 30622519 - 30622646
Alignment:
Q  11 attcaatacaattgagtataacataataaactacggaactaactaataatgtggcctctctaacgaaagtatgagctaccacattagcttatcgcctaac 110  Q
    |||||||||||||| ||||| ||||||||   |||| | || |||||||||||||||||||  | | | |||||||||||||||  |||| |||||| ||    
T  30622519 attcaatacaattgggtatagcataataagaaacgggattagctaataatgtggcctctcttgcaagattatgagctaccacatatgcttgtcgcctgac 30622618  T
Q  111 aaactccaccctcgagagttggaaaatttg 140  Q
     |||||||||  ||||||||| ||||||||    
T  30622619 gaactccacc--cgagagttgaaaaatttg 30622646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 137
Target Start/End: Complemental strand, 15633345 - 15633222
Alignment:
Q  12 ttcaatacaattgagtataacataataaactacggaactaactaataatgtggcctctctaacgaaagtatgagctaccacattagcttatcgcctaaca 111  Q
    ||||||||||||| ||||  || | ||||| |||| |||| ||| ||| ||||| |||||  | | ||||||||| ||| |||| |||| ||||||||||    
T  15633345 ttcaatacaattgggtatttcaaagtaaacaacgggactagctagtaacgtggcttctcttgcaagagtatgagcaacctcattggcttgtcgcctaaca 15633246  T
Q  112 aactccaccctcgagagttggaaaat 137  Q
    |||||||||  |||||||||||||||    
T  15633245 aactccacc--cgagagttggaaaat 15633222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 122
Target Start/End: Complemental strand, 32480331 - 32480221
Alignment:
Q  12 ttcaatacaattgagtataacataataaactacggaactaactaataatgtggcctctctaacgaaagtatgagctaccacattagcttatcgcctaaca 111  Q
    |||||||||||||||||||  | |||||||| ||| |||| ||||  | |||||||| ||  | | ||||||||| ||||| || |||| ||||||||||    
T  32480331 ttcaatacaattgagtatattaaaataaactgcgggactagctaaagacgtggcctcccttgcaagagtatgagcaaccacgttggcttgtcgcctaaca 32480232  T
Q  112 aactccaccct 122  Q
    |||||||||||    
T  32480231 aactccaccct 32480221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 47081677 - 47081799
Alignment:
Q  13 tcaatacaattgagtataacataataaactacggaactaactaataatgtggcctctctaacgaaagtatgagctaccacattagcttatcgcctaacaa 112  Q
    |||||||||||| ||||| ||||||| ||  ||| |||| ||||  | ||||||||||   | | || |||||| ||| | ||||||| |||||||||||    
T  47081677 tcaatacaattgggtatatcataatagacagcgggactagctaaagacgtggcctctcgtgcaagagcatgagccaccgcgttagcttgtcgcctaacaa 47081776  T
Q  113 actccaccctcgagagttggaaaat 137  Q
    ||||||||||  |||||||||||||    
T  47081777 actccaccct--agagttggaaaat 47081799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 8118824 - 8118933
Alignment:
Q  13 tcaatacaattgagtataacataataaactacggaactaactaataatgtggcctctctaacgaaagtatgagctaccacattagcttatcgcctaacaa 112  Q
    |||||||||||| ||||| ||||||| ||  ||| |||| ||||  | ||||||||||   | | || |||||| ||| | ||||||| |||||||||||    
T  8118824 tcaatacaattgggtatatcataatagacagcgggactagctaaagacgtggcctctcgtgcaagagcatgagccaccgcgttagcttgtcgcctaacaa 8118923  T
Q  113 actccaccct 122  Q
    ||||||||||    
T  8118924 actccaccct 8118933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 137
Target Start/End: Complemental strand, 35285149 - 35285027
Alignment:
Q  13 tcaatacaattgagtataacataataaactacggaactaactaataatgtggcctctctaacgaaagtatgagctaccacattagcttatcgcctaacaa 112  Q
    |||||||||||| ||||| ||||||| ||  ||| |||| ||||  | ||||||||||   | | ||||||||| ||| | ||||||| |||||||||||    
T  35285149 tcaatacaattgggtatatcataatagacagcgggactagctaaggacgtggcctctcgtgcaagagtatgagccaccgcgttagcttgtcgcctaacaa 35285050  T
Q  113 actccaccctcgagagttggaaaat 137  Q
    ||||||||||  |||||||||||||    
T  35285049 actccaccct--agagttggaaaat 35285027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 34723876 - 34723987
Alignment:
Q  11 attcaatacaattgagtataacataataaactacggaactaactaataatgtggcctctctaacgaaagtatgagctaccacattagcttatcgcctaac 110  Q
    |||||||||||||| ||||| ||||||||||  ||  |||| ||||  | ||||| |||||  | | ||||||||| ||||| || |||| |||||||||    
T  34723876 attcaatacaattgggtatatcataataaacggcgagactagctaaagacgtggcttctcttgcaagagtatgagcaaccacgttggcttgtcgcctaac 34723975  T
Q  111 aaactccaccct 122  Q
    ||||||||||||    
T  34723976 aaactccaccct 34723987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 140
Target Start/End: Original strand, 20526242 - 20526322
Alignment:
Q  58 aatgtggcctctctaacgaaagtatgagctaccacattagcttatcgcctaacaaactccaccctcgagagttggaaaatttg 140  Q
    ||||||||||| |   ||| ||||||||| ||||||||| ||| ||||| |||||||||||||  |||||||||| |||||||    
T  20526242 aatgtggcctcccctgcgagagtatgagccaccacattaacttgtcgccgaacaaactccacc--cgagagttggtaaatttg 20526322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 37590061 - 37590171
Alignment:
Q  12 ttcaatacaattgagtataacataataaactacggaactaactaataatgtggcctctctaacgaaagtatgagctaccacattagcttatcgcctaaca 111  Q
    ||||||||||||| |||||  | |||||||  |||||||| ||||  | |||||||| ||  | | || |||||| ||||| || |||| ||||||||||    
T  37590061 ttcaatacaattgggtatattaaaataaacggcggaactagctaaagacgtggcctcccttgcaagagcatgagcaaccacgttggcttgtcgcctaaca 37590160  T
Q  112 aactccaccct 122  Q
    |||||||||||    
T  37590161 aactccaccct 37590171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 27267912 - 27268022
Alignment:
Q  12 ttcaatacaattgagtataacataataaactacggaactaactaataatgtggcctctctaacgaaagtatgagctaccacattagcttatcgcctaaca 111  Q
    ||||||||||||| ||||  |||||||||| | || |||||||| ||| ||||| |||||  | |  |||||||| ||| | ||||||| || |||||||    
T  27267912 ttcaatacaattgggtatttcataataaacaatgggactaactagtaacgtggcttctcttgcaagtgtatgagcaacctcgttagcttgtcacctaaca 27268011  T
Q  112 aactccaccct 122  Q
    |||||||||||    
T  27268012 aactccaccct 27268022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 10973633 - 10973699
Alignment:
Q  73 acgaaagtatgagctaccacattagcttatcgcctaacaaactccaccctcgagagttggaaaatttgg 141  Q
    |||| ||| ||||| ||||||||||||| ||||| |||||||||||||  |||||||||| ||| ||||    
T  10973633 acgagagtgtgagccaccacattagcttgtcgccgaacaaactccacc--cgagagttggtaaacttgg 10973699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 14231069 - 14231032
Alignment:
Q  82 tgagctaccacattagcttatcgcctaacaaactccac 119  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  14231069 tgagccaccacattagcttgtcgcctaacaaactccac 14231032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 11502372 - 11502328
Alignment:
Q  78 agtatgagctaccacattagcttatcgcctaacaaactccaccct 122  Q
    ||||||||| ||||| || |||| |||||||||||||||||||||    
T  11502372 agtatgagcaaccacgttggcttgtcgcctaacaaactccaccct 11502328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1964 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1964
Description:

Target: scaffold1964; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 141
Target Start/End: Complemental strand, 1158 - 1101
Alignment:
Q  82 tgagctaccacattagcttatcgcctaacaaactccaccctcgagagttggaaaatttgg 141  Q
    ||||| ||||||||||||| ||||| |||||||||||||  |||||||||| ||| ||||    
T  1158 tgagccaccacattagcttgtcgccgaacaaactccacc--cgagagttggtaaacttgg 1101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0643 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0643
Description:

Target: scaffold0643; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 1094 - 1054
Alignment:
Q  82 tgagctaccacattagcttatcgcctaacaaactccaccct 122  Q
    ||||| |||||||||| || |||||||||||||||||||||    
T  1094 tgagccaccacattagtttgtcgcctaacaaactccaccct 1054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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