View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15396_low_23 (Length: 276)

Name: NF15396_low_23
Description: NF15396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15396_low_23
NF15396_low_23
[»] chr6 (8 HSPs)
chr6 (12-258)||(4368980-4369226)
chr6 (14-258)||(4364576-4364826)
chr6 (58-258)||(4359249-4359449)
chr6 (63-253)||(4383763-4383952)
chr6 (60-195)||(4388881-4389015)
chr6 (134-245)||(5726469-5726580)
chr6 (63-195)||(4376189-4376320)
chr6 (33-188)||(4415533-4415688)
[»] chr8 (1 HSPs)
chr8 (134-195)||(3595847-3595906)


Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 12 - 258
Target Start/End: Original strand, 4368980 - 4369226
Alignment:
Q  12 atactcttagagtggacctaaacaaatacaaataagattagacagcagtaggtattttacaattcatatttaatagtttttatcatcttaccatctcgaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4368980 atactcttagagtggacctaaacaaatacaaataagattagacagcagtaggtattttacaattcatatttaatagtttttatcatcttaccatctcgaa 4369079  T
Q  112 cgcatcctgaagagggaaaccaccataacaactgcatgtcaagcttaatacacgaattgcaaatttttggagctctggtggtccatctactaacgatccc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4369080 cgcatcctgaagagggaaaccaccataacaactgcatgtcaagcttaatacacgaattgcaaatttttggagctctggtggtccatctactaacgatccc 4369179  T
Q  212 caccaaattggtggaatctccatatcagctgtaattatggctattgg 258  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  4369180 caccaaattggtggaatctccatatcagccgtaattatggctattgg 4369226  T

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Target: chr6; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 14 - 258
Target Start/End: Original strand, 4364576 - 4364826
Alignment:
Q  14 actcttagagtggacctaaacaaatacaaata------agattagacagcagtaggtattttacaattcatatttaatagtttttatcatcttaccatct 107  Q
    |||||||||||||||||||||| |||||||||      ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  4364576 actcttagagtggacctaaacatatacaaatacaattcagattagacagcagtaggtattttaaaattcatattcaatagtttttatcatcttaccatct 4364675  T
Q  108 cgaacgcatcctgaagagggaaaccaccataacaactgcatgtcaagcttaatacacgaattgcaaatttttggagctctggtggtccatctactaacga 207  Q
    |||| || ||  ||| | ||  ||  |||||| |||||| |||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||    
T  4364676 cgaaggcttctggaaaacggggactcccataagaactgcttgtcaagcttaatacacggattgcaaatttctgtagctctggtggtccatctactaacga 4364775  T
Q  208 tccccaccaaattggtggaatctccatatcagctgtaattatggctattgg 258  Q
    | ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4364776 tgcccaccaaattggtggaatctccatatcagctgtaattacggctattgg 4364826  T

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Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 58 - 258
Target Start/End: Original strand, 4359249 - 4359449
Alignment:
Q  58 agtaggtattttacaattcatatttaatagtttttatcatcttaccatctcgaacgcatcctgaagagggaaaccaccataacaactgcatgtcaagctt 157  Q
    |||| ||||||||||||||||||| |||| | |||||||||||||||||||||| || | | ||  | |   ||| |||||| |||||| |||||||| |    
T  4359249 agtacgtattttacaattcatattcaatattctttatcatcttaccatctcgaaggccttccgattatgctcacccccataagaactgcctgtcaagcat 4359348  T
Q  158 aatacacgaattgcaaatttttggagctctggtggtccatctactaacgatccccaccaaattggtggaatctccatatcagctgtaattatggctattg 257  Q
    |||||||||||||| || || ||||| ||||    | ||||| | || ||| ||||||||||||||||| |||||  | |||| ||||||||||||||||    
T  4359349 aatacacgaattgcgaaattctggagatctgcatattcatctgcgaaagatgcccaccaaattggtggagtctcctcaccagcagtaattatggctattg 4359448  T
Q  258 g 258  Q
    |    
T  4359449 g 4359449  T

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Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 63 - 253
Target Start/End: Original strand, 4383763 - 4383952
Alignment:
Q  63 gtattttacaattcatatttaatagtttttatcatcttaccatctcgaacgcatcctgaagagggaaaccaccataacaactgcatgtcaagcttaatac 162  Q
    ||||||||||||||| ||| |||| ||||| |||||||||||||||||| |||  | ||  | |   ||| |||||| ||||||||||||||||||||||    
T  4383763 gtattttacaattcacattcaatatttttt-tcatcttaccatctcgaaggcactccgattacgctcacccccataagaactgcatgtcaagcttaatac 4383861  T
Q  163 acgaattgcaaatttttggagctctggtggtccatctactaacgatccccaccaaattggtggaatctccatatcagctgtaattatggct 253  Q
    ||||   ||||||||||||||||| ||| |||| ||| | || | || |||||||| || ||||||||| |||  ||||||  ||||||||    
T  4383862 acgacacgcaaatttttggagctccggtagtccctctccaaaggctctccaccaaactgatggaatctcaatacgagctgtccttatggct 4383952  T

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Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 195
Target Start/End: Original strand, 4388881 - 4389015
Alignment:
Q  60 taggtattttacaattcatatttaatagtttttatcatcttaccatctcgaacgcatcctgaagagggaaaccaccataacaactgcatgtcaagcttaa 159  Q
    |||||||||||||||| | ||| |||| ||||| ||||||||||||||| || |||  ||||  | |   ||| |||||| |||||||||||||||||||    
T  4388881 taggtattttacaattgacattcaatatttttt-tcatcttaccatctcaaatgcactctgattacgctcacccccataagaactgcatgtcaagcttaa 4388979  T
Q  160 tacacgaattgcaaatttttggagctctggtggtcc 195  Q
    |||||||   ||||||||||||||||||||| ||||    
T  4388980 tacacgacacgcaaatttttggagctctggtagtcc 4389015  T

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Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 134 - 245
Target Start/End: Complemental strand, 5726580 - 5726469
Alignment:
Q  134 ccataacaactgcatgtcaagcttaatacacgaattgcaaatttttggagctctggtggtccatctactaacgatccccaccaaattggtggaatctcca 233  Q
    |||||| ||||||||| ||||| ||||||||||||||||||||| |||||||||||| | |||||||  |  ||| ||||||||| ||||||| ||||      
T  5726580 ccataagaactgcatgccaagcataatacacgaattgcaaatttctggagctctggttgaccatctataatagatgcccaccaaactggtggagtctctt 5726481  T
Q  234 tatcagctgtaa 245  Q
     |||||||||||    
T  5726480 catcagctgtaa 5726469  T

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Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 195
Target Start/End: Original strand, 4376189 - 4376320
Alignment:
Q  63 gtattttacaattcatatttaatagtttttatcatcttaccatctcgaacgcatcctgaagagggaaaccaccataacaactgcatgtcaagcttaatac 162  Q
    ||||||||||||||| ||| |||| ||||| ||||||||||||||| || |||  | ||  | |   ||| |||||| ||||||||||||||||||||||    
T  4376189 gtattttacaattcacattcaata-tttttctcatcttaccatctcaaatgcactccgattatgatcacccccataagaactgcatgtcaagcttaatac 4376287  T
Q  163 acgaattgcaaatttttggagctctggtggtcc 195  Q
    ||||  |||||||||||||||||| ||| ||||    
T  4376288 acgacatgcaaatttttggagctccggtagtcc 4376320  T

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Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 188
Target Start/End: Complemental strand, 4415688 - 4415533
Alignment:
Q  33 acaaatacaaataagattagacagcagtaggtattttacaattcatatttaatagtttttatcatcttaccatctcgaacgcatcctgaagagggaaacc 132  Q
    |||||||||| ||| || ||  || |||||||||||||||||||||||| |||  |||||||||||||||||||||| | |||  ||||  | |   |||    
T  4415688 acaaatacaattaatataagcaagtagtaggtattttacaattcatattcaatgttttttatcatcttaccatctcgtaggcactctgattatgctcacc 4415589  T
Q  133 accataacaactgcatgtcaagcttaatacacgaattgcaaatttttggagctctg 188  Q
     |||||| |||| ||||||||||| |||| |||||| || |||||||  |||||||    
T  4415588 cccataagaactacatgtcaagctcaatatacgaatggccaatttttttagctctg 4415533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 3595906 - 3595847
Alignment:
Q  134 ccataacaactgcatgtcaagcttaatacacgaattgcaaatttttggagctctggtggtcc 195  Q
    |||||| |||| |||||||||||||||||||||    |||||||||||||||||||| ||||    
T  3595906 ccataagaacttcatgtcaagcttaatacacga--cacaaatttttggagctctggtagtcc 3595847  T

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