View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15396_low_24 (Length: 265)
Name: NF15396_low_24
Description: NF15396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15396_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 24146521 - 24146316
Alignment:
| Q |
19 |
atgaaagatttcaaacaagattgatgaaagaacggcgttgtagagatgccgagcaaaagtgtagcttggaagcctgggaagaatgcaaaagccataatta |
118 |
Q |
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| T |
24146521 |
atgaaagatttcaaacaagattgatgaaagaagtgcgttgtagagatgccgagcaaaagtgtagcttggaaccctgggaagaatgcaaaagccataatta |
24146422 |
T |
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| Q |
119 |
gtgattgctcaaaaccagaagcacagatacttactggcctcataattgaaggaagcatggtataataattagtgtcggctggaataggtgaaacttcaac |
218 |
Q |
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| T |
24146421 |
gtgattgctcaaaaccagaagcacagatacttactggcctcataattgaaggaagcatagtataataattagtgtcggctggaataggtgaaacttcaac |
24146322 |
T |
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| Q |
219 |
cctaac |
224 |
Q |
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|||||| |
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| T |
24146321 |
cctaac |
24146316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 24151945 - 24151703
Alignment:
| Q |
19 |
atgaaagatttcaaacaagattgatgaaagaacggcgttgtagagatgccgagcaaaagtgtagcttggaagcctgggaagaatgcaaaagccataatta |
118 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||| || |
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| T |
24151945 |
atgaaagatttcaaacaagattgatgaaagaagggcgttgtagagatgccgagctaaaatgtagcttggaagccttagaagaatgcaaaagccataagta |
24151846 |
T |
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| Q |
119 |
gtgattgctcaaaaccagaagcacagatac-----------ttactggcctcataattgaaggaagcatggtataa-taattagtgtcggctggaatagg |
206 |
Q |
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||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||| |
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| T |
24151845 |
gtgattgctcataatcagaagcacagatactcgctacaattttactggcctcataattgaaggaagcatagtataattaattagtgatggctggaatagg |
24151746 |
T |
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| Q |
207 |
tgaaacttcaacccta--actgacaggtacagtaagtgttaag |
247 |
Q |
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||||||||||||||| | |||||||||| ||||||| |||| |
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| T |
24151745 |
cgaaacttcaaccctaagattgacaggtacggtaagtgctaag |
24151703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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