View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15396_low_28 (Length: 240)
Name: NF15396_low_28
Description: NF15396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15396_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 134 - 225
Target Start/End: Original strand, 36541037 - 36541128
Alignment:
| Q |
134 |
aagattatacaaagcccagaatattcattgatacaaggatacaaaattatatacaagggcaaggcaatgctcatgcaaataatggagaatta |
225 |
Q |
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| T |
36541037 |
aagattatagaaagcccagaatattcattgatacaaggatacaaaattatatacaagggcaaggcaatgctcatgcaaagaatggagaatta |
36541128 |
T |
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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 96
Target Start/End: Original strand, 36541005 - 36541036
Alignment:
| Q |
65 |
cgtaagataagtcaaatgcagtgaattatatc |
96 |
Q |
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| T |
36541005 |
cgtaagataagtcaaatgcagtgaattatatc |
36541036 |
T |
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