View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15396_low_3 (Length: 569)
Name: NF15396_low_3
Description: NF15396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15396_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 1 - 555
Target Start/End: Original strand, 28238986 - 28239540
Alignment:
| Q |
1 |
cagaataatgatgaaatcaaaggagtatgttgatttctcacttgccttttgtgcatgactgcatgttaatcattgcattgtgaaacatctcaacatgtat |
100 |
Q |
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| T |
28238986 |
cagaataatgatgaaatcaaaggagtatgttgatttctcacttgccttgtgtgcatgactgcatgttaatcattgcattgtgaaacatctcaacatgtat |
28239085 |
T |
|
| Q |
101 |
ttcttttaagtatattggnnnnnnnnacgaaggagtctcgcaagaaatgctagaataatatgcagtagaaagacgattataagtggtggatcacatcctc |
200 |
Q |
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| T |
28239086 |
ttcatttgagtatattggttttttttacgaaggagtctcgcaagaaatgctagaaaaatatgcagtagaaagacaattataagtggtggatcaaatcctc |
28239185 |
T |
|
| Q |
201 |
atcttacgttccaaatcagatttgtaggaagttctaagatacaacataaaaaaggtttatgcaacatccaaacatattttatcatctcactacaatgtcg |
300 |
Q |
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| T |
28239186 |
atcttacgttccaaatcagatttgtaggaagttataagatacaacataaaaaaggtttatgcaacatccaaacatattttatcatctcactacaatgtcg |
28239285 |
T |
|
| Q |
301 |
atatatattatttcttcaccggaaatgttaatagatcttaagatggtgaactaggataaaatatgatttgacgtttctctaaaatcactatcaatgtata |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28239286 |
atatatattatttcttcaccggaaatgttaatagatcttaagatggtgaactaggataaaatatgatttgacgtttctctaaaatcactatcaatgtata |
28239385 |
T |
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| Q |
401 |
gtgaatttgtgtttttcctttacatatattctcttaatttgttcttcttcctgcaattatgaaccagttggatgtgaaatcctagttgtgatagattgaa |
500 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28239386 |
gtgaatttttgtttttcctttacatatattctcttaatttgttattcttcctgcaatgatgaaccagttggatgtgaaatcctagttttgatagattgaa |
28239485 |
T |
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| Q |
501 |
acattttagagatacttattttctattcatttctaaattcctctatcttcttttt |
555 |
Q |
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| T |
28239486 |
acattttagagatacttattttctattcatttctaaattcctctatcttcttttt |
28239540 |
T |
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