View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15396_low_32 (Length: 227)

Name: NF15396_low_32
Description: NF15396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15396_low_32
NF15396_low_32
[»] chr7 (9 HSPs)
chr7 (101-227)||(1344685-1344811)
chr7 (1-62)||(32996547-32996608)
chr7 (4-64)||(8062918-8062978)
chr7 (1-65)||(49078230-49078294)
chr7 (1-68)||(18942731-18942798)
chr7 (25-64)||(40355139-40355178)
chr7 (1-63)||(34703628-34703690)
chr7 (1-34)||(1344653-1344686)
chr7 (1-62)||(5358207-5358268)
[»] chr2 (5 HSPs)
chr2 (3-65)||(40124261-40124323)
chr2 (2-56)||(5708985-5709039)
chr2 (4-66)||(39273399-39273461)
chr2 (1-70)||(20167637-20167706)
chr2 (1-62)||(8940180-8940241)
[»] chr5 (4 HSPs)
chr5 (1-70)||(23159021-23159090)
chr5 (4-62)||(29686426-29686484)
chr5 (1-65)||(26675314-26675378)
chr5 (1-65)||(26946922-26946986)
[»] chr8 (4 HSPs)
chr8 (1-64)||(21600682-21600745)
chr8 (25-77)||(44362723-44362777)
chr8 (1-68)||(2988389-2988456)
chr8 (1-68)||(8340350-8340417)
[»] chr3 (11 HSPs)
chr3 (1-68)||(46848415-46848482)
chr3 (1-75)||(621904-621976)
chr3 (1-70)||(30843849-30843918)
chr3 (1-65)||(51889754-51889818)
chr3 (4-62)||(30843539-30843597)
chr3 (74-171)||(2535048-2535145)
chr3 (5-62)||(21568301-21568358)
chr3 (1-70)||(12832033-12832100)
chr3 (1-67)||(21568578-21568644)
chr3 (1-62)||(40619235-40619296)
chr3 (1-37)||(38989754-38989790)
[»] chr1 (9 HSPs)
chr1 (1-68)||(35684934-35685001)
chr1 (7-70)||(34177536-34177599)
chr1 (1-68)||(45392282-45392349)
chr1 (4-62)||(27900951-27901009)
chr1 (4-56)||(45679510-45679562)
chr1 (4-63)||(26515039-26515098)
chr1 (1-55)||(19464222-19464276)
chr1 (14-68)||(31134782-31134836)
chr1 (15-64)||(32669783-32669832)
[»] chr4 (14 HSPs)
chr4 (1-70)||(12034374-12034443)
chr4 (1-62)||(46804755-46804816)
chr4 (1-65)||(4161619-4161683)
chr4 (1-68)||(31903530-31903597)
chr4 (4-66)||(8171009-8171071)
chr4 (1-70)||(17381276-17381345)
chr4 (1-68)||(11840079-11840146)
chr4 (1-59)||(17381595-17381653)
chr4 (15-68)||(17753252-17753305)
chr4 (1-62)||(29223458-29223519)
chr4 (1-66)||(30316047-30316112)
chr4 (33-69)||(3892515-3892551)
chr4 (3-67)||(11839763-11839827)
chr4 (4-64)||(24806777-24806837)
[»] chr6 (4 HSPs)
chr6 (1-68)||(18354793-18354860)
chr6 (3-62)||(31141917-31141976)
chr6 (1-61)||(7792013-7792073)
chr6 (3-47)||(34937444-34937488)
[»] scaffold0329 (1 HSPs)
scaffold0329 (1-62)||(6196-6257)


Alignment Details
Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 101 - 227
Target Start/End: Original strand, 1344685 - 1344811
Alignment:
Q  101 ttgtatggaacatgagtaaagatatttgtagatgctaattgtgagacatcatgttaggtttgcaatcacacgtattgagaggacaaaacacattgatgtg 200  Q
    ||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1344685 ttgtaaggaacacgagtaaagatatttgtagatgctgattgtgagacatcatgttaggtttgcaatcacacatattgagaggacaaaacacattgatgtg 1344784  T
Q  201 aattaccattttctgacaactaagaag 227  Q
    |||||||||||||||||||||||||||    
T  1344785 aattaccattttctgacaactaagaag 1344811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 32996547 - 32996608
Alignment:
Q  1 ttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactatta 62  Q
    ||||| |||||| ||||||||||||||| |||||| |||||||| ||||||| |||| ||||    
T  32996547 ttgatgcattgagggactattgtcactattcattagacattcaaggaccaaaatgaccatta 32996608  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 8062918 - 8062978
Alignment:
Q  4 atacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacc 64  Q
    |||||||||  ||||||||| ||||||| |||||||||||| ||||||| | |||||||||    
T  8062918 atacattgacagactattgtgactactcgttacacattcaaggaccaaaataactattacc 8062978  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 49078230 - 49078294
Alignment:
Q  1 ttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattaccc 65  Q
    |||||||||||| | |||||||| ||||||||||||||||| | | || |||||||| |||||||    
T  49078230 ttgatacattgaggaactattgtaactactcattacacattaagaaacgaaagtgacaattaccc 49078294  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 18942798 - 18942731
Alignment:
Q  1 ttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctt 68  Q
    ||||||||||||  ||||||| | |||| || |||||||||||  ||||||| |||||||||||||||    
T  18942798 ttgatacattgagtgactattatgactattccttacacattcagggaccaaaatgactattacccctt 18942731  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 40355139 - 40355178
Alignment:
Q  25 actactcattacacattcaaagaccaaagtgactattacc 64  Q
    ||||||| |||||||||||||||||||| |||||||||||    
T  40355139 actactcgttacacattcaaagaccaaaatgactattacc 40355178  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 34703690 - 34703628
Alignment:
Q  1 ttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattac 63  Q
    ||||||||||||||||||||||| ||||||| ||| ||||| |  || |||| ||||||||||    
T  34703690 ttgatacattgatggactattgtgactactcgttatacatttatggatcaaaatgactattac 34703628  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 1344653 - 1344686
Alignment:
Q  1 ttgatacattgatggactattgtcactactcatt 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  1344653 ttgatacattgatggactattgtgactactcatt 1344686  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 5358268 - 5358207
Alignment:
Q  1 ttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactatta 62  Q
    |||||||||||| |||||||||| |||| |||||||||||| |  ||  |||||||||||||    
T  5358268 ttgatacattgaaggactattgtaactattcattacacatttagggatgaaagtgactatta 5358207  T

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Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 40124323 - 40124261
Alignment:
Q  3 gatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattaccc 65  Q
    |||||||| |||||||||||| ||||||| |||||||||||| ||||||||||||||||||||    
T  40124323 gatacattaatggactattgtgactactcgttacacattcaaggaccaaagtgactattaccc 40124261  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 5709039 - 5708985
Alignment:
Q  2 tgatacattgatggactattgtcactactcattacacattcaaagaccaaagtga 56  Q
    ||||||||||| |||||||||| | || ||||||||||||||| |||||||||||    
T  5709039 tgatacattgaaggactattgtgattaatcattacacattcaaggaccaaagtga 5708985  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 39273399 - 39273461
Alignment:
Q  4 atacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccc 66  Q
    ||||||| | ||||||||||  |||||||||||||||||| |||||||| || ||||||||||    
T  39273399 atacatttagggactattgtggctactcattacacattcagagaccaaaatggctattacccc 39273461  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 20167637 - 20167706
Alignment:
Q  1 ttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctttt 70  Q
    ||||| ||||||  ||||||||| ||||||  ||||||||| |||||||||| ||||||||||| |||||    
T  20167637 ttgatgcattgagtgactattgtgactacttgttacacatttaaagaccaaaatgactattacctctttt 20167706  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 8940180 - 8940241
Alignment:
Q  1 ttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactatta 62  Q
    ||||| |||||| | |||||||| |||||| |||||||||||| | |||||||||| |||||    
T  8940180 ttgatgcattgaagaactattgtgactacttattacacattcagacaccaaagtgattatta 8940241  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 23159090 - 23159021
Alignment:
Q  1 ttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctttt 70  Q
    ||||||||||||||||||||| | |||| ||||||||||||||  ||| |||||||||||||||||||||    
T  23159090 ttgatacattgatggactattataactaatcattacacattcagggactaaagtgactattacccctttt 23159021  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 29686484 - 29686426
Alignment:
Q  4 atacattgatggactattgtcactactcattacacattcaaagaccaaagtgactatta 62  Q
    ||||||||| ||| |||||| ||||||||||| |||||||  |||||||||||||||||    
T  29686484 atacattgagggattattgtgactactcattatacattcatggaccaaagtgactatta 29686426  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 26675314 - 26675378
Alignment:
Q  1 ttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattaccc 65  Q
    |||||||||| |  || |||||| | || |||||||||||||||  |||||||||||||||||||    
T  26675314 ttgatacattaaaagattattgtgattagtcattacacattcaagaaccaaagtgactattaccc 26675378  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 26946922 - 26946986
Alignment:
Q  1 ttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattaccc 65  Q
    |||||||||| |  || |||||| | || |||||||||||||||  |||||||||||||||||||    
T  26946922 ttgatacattaaaagattattgtgattagtcattacacattcaagaaccaaagtgactattaccc 26946986  T

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Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 21600682 - 21600745
Alignment:
Q  1 ttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacc 64  Q
    ||||||||||||||||||||| | |||| |||||||||||||| |||||||| |||||||||||    
T  21600682 ttgatacattgatggactattatgactaatcattacacattcagagaccaaattgactattacc 21600745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 44362723 - 44362777
Alignment:
Q  25 actactcattacacattcaaagaccaaagtgactattacccct--tttggtttag 77  Q
    |||||||||||||| |||| |||||||||||||||||||||||  ||||||||||    
T  44362723 actactcattacacgttcagagaccaaagtgactattacccctaatttggtttag 44362777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 2988389 - 2988456
Alignment:
Q  1 ttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctt 68  Q
    ||||||||||||  ||||||  | ||||||||||||| ||||| |||||||||| ||||||| |||||    
T  2988389 ttgatacattgaatgactataatgactactcattacatattcagagaccaaagtaactattatccctt 2988456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 8340350 - 8340417
Alignment:
Q  1 ttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctt 68  Q
    |||||||||| | ||||| |||| ||||||||||| ||||||||  |||||| ||||||||| |||||    
T  8340350 ttgatacattaaaggactgttgtgactactcattatacattcaagaaccaaaatgactattaaccctt 8340417  T

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Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 46848415 - 46848482
Alignment:
Q  1 ttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctt 68  Q
    |||||||||||| | |||||| | |||||||||||||||||||  |||||||||||||||||||||||    
T  46848415 ttgatacattgaggaactattttgactactcattacacattcagggaccaaagtgactattacccctt 46848482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 621904 - 621976
Alignment:
Q  1 ttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattaccccttttggttt 75  Q
    ||||||||||||  ||||||| | ||||||||||||||||||| ||||||||||||||||||  |||||| ||||    
T  621904 ttgatacattga--gactattatgactactcattacacattcagagaccaaagtgactattattccttttagttt 621976  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 30843849 - 30843918
Alignment:
Q  1 ttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctttt 70  Q
    |||||||||| |  ||||||||| |||||||||||||||||||   ||||||||||||||||| ||||||    
T  30843849 ttgatacattaagagactattgtgactactcattacacattcaggaaccaaagtgactattactcctttt 30843918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 51889818 - 51889754
Alignment:
Q  1 ttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattaccc 65  Q
    ||||||||||||  ||||||||| ||||||| ||||||||||| ||| |||| ||||||||||||    
T  51889818 ttgatacattgaaagactattgtgactactccttacacattcagagatcaaaatgactattaccc 51889754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 30843597 - 30843539
Alignment:
Q  4 atacattgatggactattgtcactactcattacacattcaaagaccaaagtgactatta 62  Q
    |||||||||  ||||||||| |||||||||||||||| ||| ||||||||||| |||||    
T  30843597 atacattgaaagactattgtgactactcattacacatgcaaggaccaaagtgagtatta 30843539  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 171
Target Start/End: Original strand, 2535048 - 2535145
Alignment:
Q  74 ttagggagttctagatatagacttcttttgtatggaacatgagtaaagatatttgtagatgctaattgtgagacatcatgttaggtttgcaatcacac 171  Q
    ||||||||| ||||||||| ||||| |||||| || ||||||||| | | ||||||||||| || |||  |||||||  |||||||||  ||||||||    
T  2535048 ttagggagtgctagatatacacttcatttgtaagggacatgagtagaaacatttgtagatggtagttgcaagacatcgggttaggtttaaaatcacac 2535145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 21568358 - 21568301
Alignment:
Q  5 tacattgatggactattgtcactactcattacacattcaaagaccaaagtgactatta 62  Q
    ||||||||  || |||||| ||||||||||||| ||| ||||||||||||||||||||    
T  21568358 tacattgagagattattgtgactactcattacatattaaaagaccaaagtgactatta 21568301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 12832100 - 12832033
Alignment:
Q  1 ttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctttt 70  Q
    |||||||||| | |||||||||| | || ||||||||  |||| |||||||||| |||||||||||||||    
T  12832100 ttgatacattaagggactattgtaattattcattaca--ttcagagaccaaagtaactattacccctttt 12832033  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 21568578 - 21568644
Alignment:
Q  1 ttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccct 67  Q
    |||||||||||   |||||||||||||| ||||||||||| ||  ||| ||||||||||||| ||||    
T  21568578 ttgatacattgggagactattgtcactattcattacacatgcagggacgaaagtgactattatccct 21568644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 40619235 - 40619296
Alignment:
Q  1 ttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactatta 62  Q
    |||||||||||| ||| || | | |||||||||||||||||||| || |||||| |||||||    
T  40619235 ttgatacattgagggattaatatgactactcattacacattcaaggatcaaagtaactatta 40619296  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 38989790 - 38989754
Alignment:
Q  1 ttgatacattgatggactattgtcactactcattaca 37  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  38989790 ttgatacattgatggactattgtgactagtcattaca 38989754  T

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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 35684934 - 35685001
Alignment:
Q  1 ttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctt 68  Q
    |||||||||||| |||||||||| |||||||||| ||||||||  ||||||||||||||| |||||||    
T  35684934 ttgatacattgaaggactattgtaactactcattgcacattcagggaccaaagtgactataacccctt 35685001  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 34177536 - 34177599
Alignment:
Q  7 cattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctttt 70  Q
    |||||| ||||||||||  ||||||||||||||||||  ||||||| |||||||||||||||||    
T  34177536 cattgaaggactattgtagctactcattacacattcagggaccaaaatgactattacccctttt 34177599  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 45392349 - 45392282
Alignment:
Q  1 ttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctt 68  Q
    |||||||||||| |||||||| | |||||||||||||||||||   | |||| |||||||||||||||    
T  45392349 ttgatacattgagggactattttgactactcattacacattcaggaatcaaaatgactattacccctt 45392282  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 27900951 - 27901009
Alignment:
Q  4 atacattgatggactattgtcactactcattacacattcaaagaccaaagtgactatta 62  Q
    ||||||||| |||||||| | |||||||||||||||||||| || |||| |||||||||    
T  27900951 atacattgaaggactattctgactactcattacacattcaaggatcaaattgactatta 27901009  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 45679562 - 45679510
Alignment:
Q  4 atacattgatggactattgtcactactcattacacattcaaagaccaaagtga 56  Q
    |||| |||||||| |||||| ||||||| ||||||||||| ||||||||||||    
T  45679562 atacgttgatggattattgtgactactcgttacacattcagagaccaaagtga 45679510  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 26515098 - 26515039
Alignment:
Q  4 atacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattac 63  Q
    ||||||| | |||| ||| | |||||||||||||||| ||| ||||||||||||||||||    
T  26515098 atacattaaaggacgattatgactactcattacacatccaaggaccaaagtgactattac 26515039  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 19464276 - 19464222
Alignment:
Q  1 ttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtg 55  Q
    |||||||||||| |||||||||| ||||||  ||||||||| || ||||||||||    
T  19464276 ttgatacattgaaggactattgtgactacttgttacacatttaaggaccaaagtg 19464222  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 31134782 - 31134836
Alignment:
Q  14 ggactattgtcactactcattacacattcaaagaccaaagtgactattacccctt 68  Q
    ||||||| || ||||||| |||||||||||  ||||||| |||||||||||||||    
T  31134782 ggactatcgtgactactcgttacacattcagggaccaaaatgactattacccctt 31134836  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 32669832 - 32669783
Alignment:
Q  15 gactattgtcactactcattacacattcaaagaccaaagtgactattacc 64  Q
    ||||||||| ||||||| |||||||||||  ||||||| |||||||||||    
T  32669832 gactattgtgactactcgttacacattcatggaccaaaatgactattacc 32669783  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 12034443 - 12034374
Alignment:
Q  1 ttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctttt 70  Q
    |||||||||||| |||||||||| ||||||| ||| |||||||  ||||||| |||||||||||||||||    
T  12034443 ttgatacattgagggactattgtgactactcgttatacattcagggaccaaaatgactattacccctttt 12034374  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 46804816 - 46804755
Alignment:
Q  1 ttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactatta 62  Q
    |||||||||||| |||||||||||||| ||| ||||| |||||||||||| |||||||||||    
T  46804816 ttgatacattgagggactattgtcactgctcgttacatattcaaagaccatagtgactatta 46804755  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 4161683 - 4161619
Alignment:
Q  1 ttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattaccc 65  Q
    |||||||||||| |||||||||| |||||||||||||||||    ||| ||||||||||||||||    
T  4161683 ttgatacattgaaggactattgtgactactcattacacatttggggacgaaagtgactattaccc 4161619  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 31903530 - 31903597
Alignment:
Q  1 ttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctt 68  Q
    ||||||| |||| |||||||||| |||| || ||||||||||| |||||||| |||| ||||||||||    
T  31903530 ttgatacgttgagggactattgtaactattcgttacacattcagagaccaaaatgaccattacccctt 31903597  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 8171009 - 8171071
Alignment:
Q  4 atacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccc 66  Q
    ||||||||| |||||||| | |||||||||||||||| ||  ||||||||||||| |||||||    
T  8171009 atacattgagggactattatgactactcattacacatccagggaccaaagtgactgttacccc 8171071  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 17381345 - 17381276
Alignment:
Q  1 ttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctttt 70  Q
    |||||||||||| |||||||||| ||||||   ||||||||||   |||||| |||||||||||||||||    
T  17381345 ttgatacattgaaggactattgtgactacttgctacacattcaggaaccaaaatgactattacccctttt 17381276  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 11840079 - 11840146
Alignment:
Q  1 ttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctt 68  Q
    |||||||||||| || ||||||  ||||||| |||| ||||||  ||||||| |||||||||||||||    
T  11840079 ttgatacattgagggcctattgcgactactccttacgcattcagggaccaaaatgactattacccctt 11840146  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 17381595 - 17381653
Alignment:
Q  1 ttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgacta 59  Q
    |||||||||||| |||||||||| ||||||  |||| ||||||  ||||||||||||||    
T  17381595 ttgatacattgagggactattgtgactacttgttactcattcagggaccaaagtgacta 17381653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 17753305 - 17753252
Alignment:
Q  15 gactattgtcactactcattacacattcaaagaccaaagtgactattacccctt 68  Q
    ||||||||| ||||||||||||| ||||| ||| |||| ||||||||| |||||    
T  17753305 gactattgtgactactcattacatattcagagatcaaaatgactattatccctt 17753252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 29223458 - 29223519
Alignment:
Q  1 ttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactatta 62  Q
    |||||| ||||||| |||||||| |||||||||||  || ||||| |||||||||| |||||    
T  29223458 ttgatatattgatgaactattgtgactactcattatccaatcaaataccaaagtgaatatta 29223519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 30316047 - 30316112
Alignment:
Q  1 ttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccc 66  Q
    |||||||||||| ||||| |||| |||||| |||| |||||||  ||||||  |||||||||||||    
T  30316047 ttgatacattgaaggacttttgtgactacttattatacattcagggaccaatatgactattacccc 30316112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 3892515 - 3892551
Alignment:
Q  33 ttacacattcaaagaccaaagtgactattaccccttt 69  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  3892515 ttacacattcaaagaccaaagtgtctattacctcttt 3892551  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 11839827 - 11839763
Alignment:
Q  3 gatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccct 67  Q
    |||| ||||| ||||||||||  |||||| ||||| ||||| |||||||| || |||||||||||    
T  11839827 gatatattgagggactattgtggctactcgttacaaattcatagaccaaaatggctattacccct 11839763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 24806777 - 24806837
Alignment:
Q  4 atacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacc 64  Q
    ||||||| | |||||||||| |||||| ||||| |||||| | |||||| |||||||||||    
T  24806777 atacattaagggactattgtaactacttattacgcattcagataccaaaatgactattacc 24806837  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 18354793 - 18354860
Alignment:
Q  1 ttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactattacccctt 68  Q
    |||||||||||| |||||||  | ||||||||||||| ||||| |||||||||| ||| ||| |||||    
T  18354793 ttgatacattgaaggactataataactactcattacatattcagagaccaaagtaactgttatccctt 18354860  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 31141976 - 31141917
Alignment:
Q  3 gatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactatta 62  Q
    ||||||||||||||||||||| |||||||   ||||||||||||| |||| | |||||||    
T  31141976 gatacattgatggactattgtgactactcggcacacattcaaagatcaaaataactatta 31141917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 7792073 - 7792013
Alignment:
Q  1 ttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactatt 61  Q
    |||||||||||| ||||||||||||| ||   ||||||||||| ||| |||| ||||||||    
T  7792073 ttgatacattgagggactattgtcacgacatcttacacattcagagatcaaaatgactatt 7792013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 34937488 - 34937444
Alignment:
Q  3 gatacattgatggactattgtcactactcattacacattcaaaga 47  Q
    |||||||||| | |||||||| ||||||| |||||||||||||||    
T  34937488 gatacattgaagaactattgtgactactcgttacacattcaaaga 34937444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 6257 - 6196
Alignment:
Q  1 ttgatacattgatggactattgtcactactcattacacattcaaagaccaaagtgactatta 62  Q
    ||||||||||||||||||||||  ||||||| || |||||| | ||||| || |||||||||    
T  6257 ttgatacattgatggactattgggactactcgttgcacattgagagaccgaaatgactatta 6196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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