View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15396_low_5 (Length: 547)
Name: NF15396_low_5
Description: NF15396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15396_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 18 - 538
Target Start/End: Original strand, 41875216 - 41875734
Alignment:
| Q |
18 |
atttggatttttcctcactaatttttt-gagttatctggtttactctatctactgttatactcttgnnnnnnnnnnnnnnnnngaagaaatgactatata |
116 |
Q |
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|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
41875216 |
atttggatttttccccactaatttttttgagttatctggtttactctatctactgttatactcttgaaaaaaataataaa---gaagaaatgactatata |
41875312 |
T |
|
| Q |
117 |
atattttcttctgtattctatgtcgttagtggagcttttaaatttagaggtgcctgcaatgctgttttctctcttacagatgaagatgcttctaaaggtg |
216 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41875313 |
atattttcttctgtattctatgtcgttagcggagcttttaaatttagaggtgcctgcaatgctgttttctctctcacagatgaagatgcttctaaaggtg |
41875412 |
T |
|
| Q |
217 |
ttataacacacagcaggtttgttttatgcaataattacataagttattttttcaaatctgattcagttaatttattctcttctaatgttgttctctgaaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41875413 |
ttataacacacagcaggtttgttttatgcaataaatacataagttattttttcaaatctgattcagttaatttattctcttctaatgttgttctctgaaa |
41875512 |
T |
|
| Q |
317 |
tcagtggaaatcatgctgctgcattggctttggcagcaaaactaaggggaatccctgcatacgttgttactccaaaaaatgtgccaatttgtaaacttga |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41875513 |
tcagtggaaatcatgctgctgcattggctttggcagcaaaactaaggggaatccctgcatacgttgttactccaaaaaatgtgccaatttgtaaacttga |
41875612 |
T |
|
| Q |
417 |
gaatgttaagaggtatgatggtaaggttaacttttctgaggccaacatacggtcaagagatgaagttgcgaatatattgcgacaagaaaccggtgctata |
516 |
Q |
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| T |
41875613 |
gaatgttaagaggtatgatggtaaggttaacttttctgaggccaacataaggtcaagagatgaagttgcgtatatattacgacaagaaaccggtgctata |
41875712 |
T |
|
| Q |
517 |
tttataccttcttctgatgatg |
538 |
Q |
| |
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||||||||||||||| |||||| |
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| T |
41875713 |
tttataccttcttctaatgatg |
41875734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 149; Significance: 2e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 144 - 523
Target Start/End: Complemental strand, 40868891 - 40868504
Alignment:
| Q |
144 |
agtggagcttttaaatttagaggtgcctgcaatgctgttttctctcttacagatgaagatgcttctaaaggtgttataacacacagcaggtttgttttat |
243 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||| |||||||| |||||||||||||||||||||||| | | |
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| T |
40868891 |
agtggagcttttaaatttagaggtgcatgcaatgctgttttctctctcaatgatgaagatgcgtctaaaggggttataacacacagcaggtttgttatgt |
40868792 |
T |
|
| Q |
244 |
gcaata---attacataag----ttattttttcaaatctgattcagttaatttattct-cttctaatgttgttctctgaaatcagtggaaatcatgctgc |
335 |
Q |
| |
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||| || ||| || || |||||||||||||||| ||| || | |||||| | ||||| | |||||||||||||||||||||||| |||||||| |
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| T |
40868791 |
gcagtagtaattccagaaactgattattttttcaaatcttattttgtaattttattgttcttctgacgttgttctctgaaatcagtggaaaccatgctgc |
40868692 |
T |
|
| Q |
336 |
tgcattggctttggcagcaaaactaaggggaatccctgcatacgttgttactccaaaaaatgtgccaatttgtaaacttgagaatgttaagaggtatgat |
435 |
Q |
| |
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|||||||||| |||||||||||||| |||| |||||||||||| |||||| ||| ||||||| ||||| |||||| |||||||||| ||| |||||| | |
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| T |
40868691 |
tgcattggctctggcagcaaaactacgggggatccctgcatacattgttattcctaaaaatgcgccaacatgtaaaattgagaatgtgaagcggtatggt |
40868592 |
T |
|
| Q |
436 |
ggtaaggttaacttttctgaggccaacatacggtcaagagatgaagttgcgaatatattgcgacaagaaaccggtgctatatttatac |
523 |
Q |
| |
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||| |||||| || ||||||||||| || || |||||||| ||| |||||||| | || | |||||||| |||||||| ||||||| |
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| T |
40868591 |
ggtcaggttatctggtctgaggccaatatgcgatcaagagaggaaactgcgaataaagtgtggcaagaaactggtgctatttttatac |
40868504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 111 - 240
Target Start/End: Complemental strand, 24818392 - 24818262
Alignment:
| Q |
111 |
tatataatattttcttctgtattctatgtcg-ttagtggagcttttaaatttagaggtgcctgcaatgctgttttctctcttacagatgaagatgcttct |
209 |
Q |
| |
|
|||||||||||| ||| ||||||||||| | |||| ||||||||||||||||| ||||| ||||| |||||| ||||||| || |||||||| |||||| |
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| T |
24818392 |
tatataatatttccttttgtattctatgaccattagcggagcttttaaatttaggggtgcatgcaacgctgttctctctctgaccgatgaagaggcttct |
24818293 |
T |
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| Q |
210 |
aaaggtgttataacacacagcaggtttgttt |
240 |
Q |
| |
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||||| || | ||||||||||||| ||||| |
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| T |
24818292 |
aaaggagtaactacacacagcaggtgtgttt |
24818262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 315 - 530
Target Start/End: Complemental strand, 24818185 - 24817970
Alignment:
| Q |
315 |
aatcagtggaaatcatgctgctgcattggctttggcagcaaaactaaggggaatccctgcatacgttgttactccaaaaaatgtgccaatttgtaaactt |
414 |
Q |
| |
|
||||||||| || |||||||||||||| ||||||||||||| ||||||| |||||||||| |||| ||| |||| || ||| ||||||| || |
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| T |
24818185 |
aatcagtgggaaccatgctgctgcattatctttggcagcaaagataagggggatccctgcatttattgtggttccgaaaagtgcaccatcttgtaaagtt |
24818086 |
T |
|
| Q |
415 |
gagaatgttaagaggtatgatggtaaggttaacttttctgaggccaacatacggtcaagagatgaagttgcgaatatattgcgacaagaaaccggtgcta |
514 |
Q |
| |
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|| ||| |||||||||| ||||| || ||||| || |||||| || || | ||||||||| |||||| ||| | | || | |||||||| |||||| |
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| T |
24818085 |
gaaaatattaagaggtacgatggaaacgttaatttggctgaggataatatgcagtcaagagaagaagttatgaacaaagtgaggcaagaaacaagtgcta |
24817986 |
T |
|
| Q |
515 |
tatttataccttcttc |
530 |
Q |
| |
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| | |||||||||||| |
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|
| T |
24817985 |
tctatataccttcttc |
24817970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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