View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15396_low_7 (Length: 511)
Name: NF15396_low_7
Description: NF15396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15396_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 44 - 496
Target Start/End: Complemental strand, 45057119 - 45056667
Alignment:
| Q |
44 |
ctcagtagtctcttacttccttttggttcttggttttgttttacttcttacgcaagtttttccctctttctcctaattttctctctcaaaaatattttct |
143 |
Q |
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| T |
45057119 |
ctcagtagtctcttacttccttttggttcttggttttgttttacttcttacgcaagtttttccctctttctcctaattttctctctcaaaaatattttct |
45057020 |
T |
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| Q |
144 |
cgagaaaacctcacacgtgagaaaatgtctcgtttgtcctttccttcacttcctccaccaccgcctcgtcctccaaacgctattatcgttgctcttgtac |
243 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
45057019 |
cgagaaaacctcacacgtgagagaatgtctcgtttgtcttttccttcacttcctccaccaccgcctcgtcccccaaacgctattatcgttgctcttgtac |
45056920 |
T |
|
| Q |
244 |
tcgccattctccttttcaacgaaaatcgtaaatgatataatatacattttcagtacattttaggtttttcggtttaggaacttttcttcttaatcttgat |
343 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45056919 |
tcgccattctccttttcaacgaaaatcgtaaatgatataatatacattttcagtacattttaggtttttcggtttaggaacttttcttcttaatcttgat |
45056820 |
T |
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| Q |
344 |
ctcgacttttctataatcgttcttcttcttgtacagctagtctaactgattcttgaaaagattcttgcattttgagtcaaatactctttgacttgtgtga |
443 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45056819 |
ctcgatttttctataatcgttcttcttcttgtacagctagtctaactgattcttgaaaagattcttgcattttgagtcaaatactctttgacttgtgtga |
45056720 |
T |
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| Q |
444 |
ttgaggattttcccgagaaaatgggccaggaaaatcgatatgcagcactttct |
496 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45056719 |
ttgaggattttcccgagaaaatgggccaggaaaatcgatatgcagcactttct |
45056667 |
T |
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