View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15396_low_8 (Length: 447)
Name: NF15396_low_8
Description: NF15396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15396_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 4e-79; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 143 - 420
Target Start/End: Original strand, 2016167 - 2016457
Alignment:
| Q |
143 |
aaaaagtgaatttatcgtttataatagtgaataaagagtgtatgtcattccttcaataactaaaaacagccgccaatactgtttattgatnnnnnnnnnt |
242 |
Q |
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| T |
2016167 |
aaaaagtgaatttattgcttataatagtgaacaaagagtatatgtcattccttcaacaactaaaaacagccgccaatactgtttattgattaaaaaaaaa |
2016266 |
T |
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| Q |
243 |
ataa------------ggcaccttatactaataccaatgatgatatgatactgcatgcaaaacaatgatgataaaatactttattatgcaaccaattatt |
330 |
Q |
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| T |
2016267 |
aaaaaaaaaaaaaaaaggcaccttatactaatactaacgatgatatgatactacatgcaaaacaatgatgataaaatactttattatgcaaccaattatt |
2016366 |
T |
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| Q |
331 |
aatgataatatcataccttaattaaggtaattctac-aannnnnnncacgtcaagtttttccatttagaaaataaataacacgcaaacgta |
420 |
Q |
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| T |
2016367 |
aatgataatatcataccttaattaaggtaattctacaaaaaaaattcacgtcaagtttttccatttataaaataaataacacgcaaacgta |
2016457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 2008771 - 2008950
Alignment:
| Q |
16 |
acattacatggcatcacgaaaaagtccagtgtaagatctatcagaatgaatctaataaaaagaatgtgaagtgtaagacaattgtcatgataaatatgct |
115 |
Q |
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| T |
2008771 |
acattacatggcatcaccaaaaagttaagtgtaagacctataagaatgcatctaataaaaagaatgtgaagtgtaagacaattgtcatggtaaatat--- |
2008867 |
T |
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| Q |
116 |
gaccatatattacatttcaataaatctaaaaagtgaatttatcgtttataatagtgaataaagagtgtatgtcattccttcaataactaaaaacag |
211 |
Q |
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| T |
2008868 |
-------------atttcaataaatctaaaaagtgaatttatcgcttataatagtgaacaaagagtgtatgtcattccttcaacaacaaaaaacag |
2008950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 319 - 408
Target Start/End: Original strand, 2008994 - 2009083
Alignment:
| Q |
319 |
caaccaattattaatgataatatcataccttaattaaggtaattctacaannnnnnncacgtcaagtttttccatttagaaaataaataa |
408 |
Q |
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| T |
2008994 |
caaccaattatttatgataatatcgtaccttgattacgctaattctacaatttttgtcacgtcaagtttttctatttagaaaataaataa |
2009083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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