View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15396_low_9 (Length: 435)
Name: NF15396_low_9
Description: NF15396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15396_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 17 - 423
Target Start/End: Original strand, 44824207 - 44824613
Alignment:
| Q |
17 |
cataaatgccacccgataactacatcatgtctgttcatgttagtgggatcacaacccttgctgttatcatggcttgcatcttggtcaaaaatacgagggt |
116 |
Q |
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| T |
44824207 |
cataaatgccacccgataactacatcatgtctgttcatgttagtgggatcacaacccttgctgttatcatggcttgcatcttggtcaaaaatacgagggt |
44824306 |
T |
|
| Q |
117 |
agtacactgtacaaaaccaccaaaagaaaggcatataagaatagcatagcacctataacaaaaatgtttccaacacctaactaagacaacatatctcaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44824307 |
agtacactgtacaaaaccaccaaaagaaaggcatataagaatagcatagcacctataacaaaaatgtttccaacacctaactaagacaacatatctcaat |
44824406 |
T |
|
| Q |
217 |
taagagctgtgtgcccacaacaaggccactgccttattctatgacagtgaaacaaagaaccaaaaaacagcacctatatgagcagccaaagatagttcac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44824407 |
taagagctgtgtgcccacaacaaggccactgccttattctatgacagtgaaacaaagaaccaaaaaacagcacctatatgagcagccaaagatagttcac |
44824506 |
T |
|
| Q |
317 |
agtgcccatgtctagcagcagcaaataaaggcacagctggaccgaaaacaatatagaacacagcaggtcccaaataggcttcctcttatcccaaaatgca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44824507 |
agtgcccatgtctagcagcagcaaataaaggcacagctggaccgaaaacaatatagaacacagcaggtcccaaataggcttcctcttatcccaaaatgca |
44824606 |
T |
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| Q |
417 |
atccctt |
423 |
Q |
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||||||| |
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| T |
44824607 |
atccctt |
44824613 |
T |
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