View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15397_high_3 (Length: 278)

Name: NF15397_high_3
Description: NF15397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15397_high_3
NF15397_high_3
[»] chr5 (5 HSPs)
chr5 (1-240)||(33584501-33584739)
chr5 (186-242)||(10161328-10161384)
chr5 (186-234)||(23245202-23245250)
chr5 (186-240)||(26916847-26916901)
chr5 (186-242)||(5243486-5243542)
[»] chr1 (3 HSPs)
chr1 (186-242)||(23926097-23926153)
chr1 (186-240)||(5609919-5609973)
chr1 (186-241)||(34900136-34900191)
[»] chr2 (1 HSPs)
chr2 (186-240)||(32006505-32006559)
[»] chr4 (6 HSPs)
chr4 (186-241)||(3683602-3683657)
chr4 (186-232)||(12701836-12701882)
chr4 (186-227)||(33632866-33632907)
chr4 (186-240)||(19655514-19655568)
chr4 (186-242)||(2321833-2321889)
chr4 (186-234)||(9132113-9132161)
[»] chr3 (6 HSPs)
chr3 (186-242)||(16973037-16973093)
chr3 (186-234)||(42605714-42605762)
chr3 (186-242)||(22101350-22101406)
chr3 (186-242)||(22176294-22176350)
chr3 (186-240)||(38076746-38076800)
chr3 (186-219)||(51970218-51970251)
[»] chr8 (2 HSPs)
chr8 (186-242)||(35063722-35063778)
chr8 (186-227)||(5493264-5493305)
[»] chr7 (1 HSPs)
chr7 (186-240)||(32651915-32651969)
[»] scaffold0031 (1 HSPs)
scaffold0031 (186-234)||(78657-78705)


Alignment Details
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 33584739 - 33584501
Alignment:
Q  1 tggtaacaaaggaaatggaatcagtggggtggaggtcaacgagaaattagagaatgtagtctaacctataagatggtcaatgagttccatcatggtatga 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33584739 tggtaacaaaggaaatggaatcagtgaggtggaggtcaacgagaaattagagaatgtagtctaacctataagatggtcaatgagttccatcatggtatga 33584640  T
Q  101 aatcccttcttttctatgtataaacannnnnnnnncttgttaatcggtgctccgtcccgggcactagttaaggaaac---nnnnnnnntatttgcattga 197  Q
    |||||||||||||||||||||||||           || ||  ||||||||||| ||||  ||||||||||||||||           ||||||||||||    
T  33584639 aatcccttcttttctatgtataaac----ttttttttttttcttcggtgctccgccccgaacactagttaaggaaacaagaaaagaaatatttgcattga 33584544  T
Q  198 aaatattattctttacactttttaaactttaactacaaaagtt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  33584543 aaatattattctttacactttttaaactttaactacaaaagtt 33584501  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 10161328 - 10161384
Alignment:
Q  186 tatttgcattgaaaatattattctttacactttttaaactttaactacaaaagttcc 242  Q
    ||||||||||||||| || ||| ||||||||||||||||||| | |||| |||||||    
T  10161328 tatttgcattgaaaacatcattttttacactttttaaactttgattacacaagttcc 10161384  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 23245202 - 23245250
Alignment:
Q  186 tatttgcattgaaaatattattctttacactttttaaactttaactaca 234  Q
    ||||||||||||||| || |||||||||||||||||| |||| ||||||    
T  23245202 tatttgcattgaaaacatcattctttacactttttaatctttgactaca 23245250  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 26916847 - 26916901
Alignment:
Q  186 tatttgcattgaaaatattattctttacactttttaaactttaactacaaaagtt 240  Q
    ||||||||||||||| || ||| ||||||||||||||| ||| |||||| |||||    
T  26916847 tatttgcattgaaaaaatcattttttacactttttaaatttttactacacaagtt 26916901  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 5243542 - 5243486
Alignment:
Q  186 tatttgcattgaaaatattattctttacactttttaaactttaactacaaaagttcc 242  Q
    |||||||||||||||  ||||  ||||| ||||||||||||| |||||| |||||||    
T  5243542 tatttgcattgaaaacgttatcttttaccctttttaaactttgactacataagttcc 5243486  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 23926153 - 23926097
Alignment:
Q  186 tatttgcattgaaaatattattctttacactttttaaactttaactacaaaagttcc 242  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||    
T  23926153 tatttgcattgaaaatatcattctttacactttttaaactttgactacacaagttcc 23926097  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 5609919 - 5609973
Alignment:
Q  186 tatttgcattgaaaatattattctttacactttttaaactttaactacaaaagtt 240  Q
    |||||| ||||| ||| | |||||||||||||||||||||||||||||| |||||    
T  5609919 tatttgtattgagaatgtcattctttacactttttaaactttaactacacaagtt 5609973  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 241
Target Start/End: Original strand, 34900136 - 34900191
Alignment:
Q  186 tatttgcattgaaaatattattctttacactttttaaactttaactacaaaagttc 241  Q
    |||||||||||| || || |||||||| |||||||||||||| |||||| ||||||    
T  34900136 tatttgcattgagaacatcattctttatactttttaaactttgactacacaagttc 34900191  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 32006505 - 32006559
Alignment:
Q  186 tatttgcattgaaaatattattctttacactttttaaactttaactacaaaagtt 240  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||| |||||    
T  32006505 tatttgcattgaaaatatcattctttacactttttaaactttgactacacaagtt 32006559  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 241
Target Start/End: Original strand, 3683602 - 3683657
Alignment:
Q  186 tatttgcattgaaaatattattctttacactttttaaactttaactacaaaagttc 241  Q
    |||||| |||||||| |||||| |||||||||||||||||||||||||||| ||||    
T  3683602 tatttgtattgaaaacattattatttacactttttaaactttaactacaaatgttc 3683657  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 12701836 - 12701882
Alignment:
Q  186 tatttgcattgaaaatattattctttacactttttaaactttaacta 232  Q
    ||||||||||||||| || ||||||||||||||||||||||| ||||    
T  12701836 tatttgcattgaaaacatcattctttacactttttaaactttgacta 12701882  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 33632907 - 33632866
Alignment:
Q  186 tatttgcattgaaaatattattctttacactttttaaacttt 227  Q
    |||||| ||||||||||| |||||||||||||||||||||||    
T  33632907 tatttgtattgaaaatatcattctttacactttttaaacttt 33632866  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 19655514 - 19655568
Alignment:
Q  186 tatttgcattgaaaatattattctttacactttttaaactttaactacaaaagtt 240  Q
    |||||| ||| |||| || ||||||||||||||||||||||| |||||| |||||    
T  19655514 tatttgtattaaaaacataattctttacactttttaaactttgactacacaagtt 19655568  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 2321889 - 2321833
Alignment:
Q  186 tatttgcattgaaaatattattctttacactttttaaactttaactacaaaagttcc 242  Q
    ||||||||||||||| || ||  ||||||||||||||||||| || ||| |||||||    
T  2321889 tatttgcattgaaaacatcatcttttacactttttaaactttcaccacacaagttcc 2321833  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 9132161 - 9132113
Alignment:
Q  186 tatttgcattgaaaatattattctttacactttttaaactttaactaca 234  Q
    |||||| |||||||| || ||| ||||||||||||||||||| ||||||    
T  9132161 tatttggattgaaaacatcattttttacactttttaaactttgactaca 9132113  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 16973037 - 16973093
Alignment:
Q  186 tatttgcattgaaaatattattctttacactttttaaactttaactacaaaagttcc 242  Q
    |||||| |||||||| || ||||||||||||||||||||||| |||||| |||||||    
T  16973037 tatttgtattgaaaacataattctttacactttttaaactttgactacacaagttcc 16973093  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 42605714 - 42605762
Alignment:
Q  186 tatttgcattgaaaatattattctttacactttttaaactttaactaca 234  Q
    |||||||||  ||||||||||| ||||||||||||||||||||||||||    
T  42605714 tatttgcataaaaaatattattttttacactttttaaactttaactaca 42605762  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 22101406 - 22101350
Alignment:
Q  186 tatttgcattgaaaatattattctttacactttttaaactttaactacaaaagttcc 242  Q
    ||||||||||||||  || |||||||| |||||||||||||| |||||| |||||||    
T  22101406 tatttgcattgaaagcatcattctttatactttttaaactttgactacacaagttcc 22101350  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 22176350 - 22176294
Alignment:
Q  186 tatttgcattgaaaatattattctttacactttttaaactttaactacaaaagttcc 242  Q
    ||||||||||||||| || ||| |||| |||||||||||||| |||||| |||||||    
T  22176350 tatttgcattgaaaacatcattatttatactttttaaactttgactacacaagttcc 22176294  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 38076800 - 38076746
Alignment:
Q  186 tatttgcattgaaaatattattctttacactttttaaactttaactacaaaagtt 240  Q
    |||||| |||||||| || ||| ||||||||||||||| |||||||||| |||||    
T  38076800 tatttgtattgaaaacatcattttttacactttttaaattttaactacacaagtt 38076746  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 219
Target Start/End: Original strand, 51970218 - 51970251
Alignment:
Q  186 tatttgcattgaaaatattattctttacactttt 219  Q
    |||||||||| |||||||||||||||||||||||    
T  51970218 tatttgcattaaaaatattattctttacactttt 51970251  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 35063778 - 35063722
Alignment:
Q  186 tatttgcattgaaaatattattctttacactttttaaactttaactacaaaagttcc 242  Q
    ||||||||||||||| ||  |||||||||||||| ||||||| |||||| |||||||    
T  35063778 tatttgcattgaaaacatctttctttacacttttgaaactttgactacacaagttcc 35063722  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 5493305 - 5493264
Alignment:
Q  186 tatttgcattgaaaatattattctttacactttttaaacttt 227  Q
    ||||||||||||||| || |||||||||||||||| ||||||    
T  5493305 tatttgcattgaaaacataattctttacacttttttaacttt 5493264  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 32651915 - 32651969
Alignment:
Q  186 tatttgcattgaaaatattattctttacactttttaaactttaactacaaaagtt 240  Q
    ||||||||||||||| || ||| |||| |||||||||||||| |||||| |||||    
T  32651915 tatttgcattgaaaacatcattatttatactttttaaactttgactacacaagtt 32651969  T

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Target: scaffold0031 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 78705 - 78657
Alignment:
Q  186 tatttgcattgaaaatattattctttacactttttaaactttaactaca 234  Q
    |||||||||| |||| || ||||| ||||||||||||||||| ||||||    
T  78705 tatttgcattaaaaacatcattctatacactttttaaactttgactaca 78657  T

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