View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15397_high_4 (Length: 271)
Name: NF15397_high_4
Description: NF15397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15397_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 36692042 - 36691802
Alignment:
| Q |
14 |
atgaacaaaatgttacctgtgcagttgatagataaaagaatacaggtaatccattaatctcagtgatcaaatgcaaatgtttttatggatatctatactc |
113 |
Q |
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| T |
36692042 |
atgaacaaaatgttacctgtgcagttgatagataaaagaatacaggtaatccattaatctcactgatcaaatgcaaatgtttttatggatatctatactc |
36691943 |
T |
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| Q |
114 |
ataaaataacataatattgttgtctgttatgnnnnnnnggtatggatgaaatcaacagatcaataaagttggacggttggcttataagatgaacttcaca |
213 |
Q |
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| T |
36691942 |
ataaaataacataatattgttgtctgttatgtttttttggtatggatgaaatcaacagatcaataaagttggacggttggcttataagatgaacttcaca |
36691843 |
T |
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| Q |
214 |
aaattctatcatgcaacgcaatactttagtaaggacaatgt |
254 |
Q |
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| T |
36691842 |
aaattctatcatgcaacgcaatactttagtaaggacaatgt |
36691802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 230
Target Start/End: Complemental strand, 23655582 - 23655507
Alignment:
| Q |
155 |
atggatgaaatcaacagatcaataaagttggacggttggcttataagatgaacttcacaaaattctatcatgcaac |
230 |
Q |
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| T |
23655582 |
atggatgacttcaccagatcagtaaagttggacgattgacttatagaatgaacttcacaaaactttgtcatgcaac |
23655507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 230
Target Start/End: Original strand, 23802988 - 23803063
Alignment:
| Q |
155 |
atggatgaaatcaacagatcaataaagttggacggttggcttataagatgaacttcacaaaattctatcatgcaac |
230 |
Q |
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| T |
23802988 |
atggatgacttcaccagatcagtaaagttggacgattgacttatagaatgaacttcacaaaactttgtcatgcaac |
23803063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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