View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15397_high_6 (Length: 210)

Name: NF15397_high_6
Description: NF15397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15397_high_6
NF15397_high_6
[»] scaffold1315 (2 HSPs)
scaffold1315 (1-110)||(1764-1873)
scaffold1315 (155-189)||(1925-1959)
[»] scaffold1293 (2 HSPs)
scaffold1293 (1-110)||(198-307)
scaffold1293 (155-189)||(112-146)
[»] chr4 (10 HSPs)
chr4 (1-109)||(42756285-42756393)
chr4 (59-110)||(30023643-30023694)
chr4 (48-109)||(36273056-36273117)
chr4 (49-109)||(53261089-53261149)
chr4 (7-47)||(39976093-39976133)
chr4 (58-104)||(54223561-54223607)
chr4 (7-48)||(17449866-17449907)
chr4 (49-110)||(33380602-33380663)
chr4 (53-81)||(32008372-32008400)
chr4 (64-104)||(46321359-46321399)
[»] chr6 (7 HSPs)
chr6 (47-110)||(16193827-16193890)
chr6 (56-108)||(369519-369571)
chr6 (53-103)||(2543848-2543898)
chr6 (1-70)||(24360516-24360586)
chr6 (43-80)||(11448193-11448230)
chr6 (5-46)||(16275191-16275232)
chr6 (7-47)||(1600324-1600364)
[»] chr1 (6 HSPs)
chr1 (56-110)||(10449454-10449508)
chr1 (48-110)||(44938793-44938855)
chr1 (55-103)||(28739418-28739466)
chr1 (56-110)||(15928080-15928133)
chr1 (66-108)||(28810060-28810102)
chr1 (5-46)||(29997852-29997893)
[»] chr3 (12 HSPs)
chr3 (55-107)||(22894000-22894052)
chr3 (55-110)||(29081697-29081752)
chr3 (62-110)||(28309087-28309135)
chr3 (55-103)||(11512392-11512440)
chr3 (58-110)||(32385366-32385418)
chr3 (7-47)||(36097344-36097384)
chr3 (49-109)||(36738360-36738420)
chr3 (56-110)||(48342793-48342847)
chr3 (54-110)||(45046779-45046836)
chr3 (7-47)||(12745330-12745370)
chr3 (55-106)||(26043595-26043649)
chr3 (7-47)||(50331403-50331443)
[»] chr7 (5 HSPs)
chr7 (55-108)||(25099349-25099402)
chr7 (55-103)||(7211865-7211913)
chr7 (55-103)||(17272704-17272752)
chr7 (55-110)||(32315712-32315767)
chr7 (7-47)||(12978274-12978314)
[»] chr5 (4 HSPs)
chr5 (47-103)||(896266-896322)
chr5 (53-103)||(5215675-5215725)
chr5 (62-110)||(12605653-12605701)
chr5 (65-108)||(42772065-42772108)
[»] chr2 (5 HSPs)
chr2 (55-107)||(7755341-7755393)
chr2 (56-96)||(13421801-13421841)
chr2 (7-46)||(6467556-6467595)
chr2 (1-70)||(20443202-20443272)
chr2 (53-81)||(5913519-5913547)
[»] chr8 (3 HSPs)
chr8 (7-47)||(21587642-21587682)
chr8 (49-97)||(33763457-33763505)
chr8 (7-47)||(23141197-23141237)
[»] scaffold0110 (1 HSPs)
scaffold0110 (62-109)||(26512-26559)


Alignment Details
Target: scaffold1315 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 1764 - 1873
Alignment:
Q  1 caagtgcttcaactaacccataaaattaccaataactcactatatttcggaaaacacttgggtgacattgtggttggtgactttgatcaaccacaatttc 100  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  1764 caagtgcttcaactaacccgtaaaattaccaataactcactctattccggaaaacacttgggtgacattgtggttggtgacattgatcaaccacaatatc 1863  T
Q  101 acaagtgtac 110  Q
    ||||||||||    
T  1864 acaagtgtac 1873  T

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Target: scaffold1315; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 1925 - 1959
Alignment:
Q  155 cttatgacattgtggtttccacggacaaaatacaa 189  Q
    |||||||||||||||||||||| ||||||||||||    
T  1925 cttatgacattgtggtttccactgacaaaatacaa 1959  T

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Target: scaffold1293 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 307 - 198
Alignment:
Q  1 caagtgcttcaactaacccataaaattaccaataactcactatatttcggaaaacacttgggtgacattgtggttggtgactttgatcaaccacaatttc 100  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  307 caagtgcttcaactaacccgtaaaattaccaataactcactctattccggaaaacacttgggtgacattgtggttggtgacattgatcaaccacaatatc 208  T
Q  101 acaagtgtac 110  Q
    ||||||||||    
T  207 acaagtgtac 198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 189
Target Start/End: Complemental strand, 146 - 112
Alignment:
Q  155 cttatgacattgtggtttccacggacaaaatacaa 189  Q
    |||||||||||||||||||||| ||||||||||||    
T  146 cttatgacattgtggtttccactgacaaaatacaa 112  T

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Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 42756393 - 42756285
Alignment:
Q  1 caagtgcttcaactaacccataaaattaccaataactcactatatttcggaaaacacttgggtgacattgtggttggtgactttgatcaaccacaatttc 100  Q
    ||||||||||||||||||| ||||||||||||||| ||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||  |    
T  42756393 caagtgcttcaactaacccgtaaaattaccaataagtcactctattccggaaaacacttgagtgacattgtggttggtgactttgatcaaccacaatgcc 42756294  T
Q  101 acaagtgta 109  Q
    |||||||||    
T  42756293 acaagtgta 42756285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 30023694 - 30023643
Alignment:
Q  59 tgggtgacattgtggttggtgactttgatcaaccacaatttcacaagtgtac 110  Q
    ||||||||||||||||||||||| |||| |||||||||| ||||||||||||    
T  30023694 tgggtgacattgtggttggtgacattgaccaaccacaatgtcacaagtgtac 30023643  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 36273117 - 36273056
Alignment:
Q  48 cggaaaacacttgggtgacattgtggttggtgactttgatcaaccacaatttcacaagtgta 109  Q
    |||| |||||||||||||||||||||| |||||  |||| |||||||||| |||||||||||    
T  36273117 cggataacacttgggtgacattgtggtcggtgatattgaccaaccacaatatcacaagtgta 36273056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 53261089 - 53261149
Alignment:
Q  49 ggaaaacacttgggtgacattgtggttggtgactttgatcaaccacaatttcacaagtgta 109  Q
    |||||| |||| ||||||||||||||||||||| |||| |||||||||| ||||| |||||    
T  53261089 ggaaaatacttaggtgacattgtggttggtgacattgaccaaccacaatgtcacatgtgta 53261149  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 39976093 - 39976133
Alignment:
Q  7 cttcaactaacccataaaattaccaataactcactatattt 47  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  39976093 cttcaactaaaccataaaattaccaataactcactttattt 39976133  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 54223561 - 54223607
Alignment:
Q  58 ttgggtgacattgtggttggtgactttgatcaaccacaatttcacaa 104  Q
    |||| ||||||||||||||||||| |||| |||||||||| ||||||    
T  54223561 ttggatgacattgtggttggtgacattgaccaaccacaatgtcacaa 54223607  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 17449866 - 17449907
Alignment:
Q  7 cttcaactaacccataaaattaccaataactcactatatttc 48  Q
    ||||||| ||||||||||||||||||||| ||||||| ||||    
T  17449866 cttcaacaaacccataaaattaccaataattcactatgtttc 17449907  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 33380602 - 33380663
Alignment:
Q  49 ggaaaacacttgggtgacattgtggttggtgactttgatcaaccacaatttcacaagtgtac 110  Q
    |||||| |||| | ||||||||||||||||||  ||| ||||||||||| | ||||||||||    
T  33380602 ggaaaatacttagatgacattgtggttggtgatattggtcaaccacaatgtaacaagtgtac 33380663  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 81
Target Start/End: Complemental strand, 32008400 - 32008372
Alignment:
Q  53 aacacttgggtgacattgtggttggtgac 81  Q
    |||||||||||||||||||||||||||||    
T  32008400 aacacttgggtgacattgtggttggtgac 32008372  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 46321359 - 46321399
Alignment:
Q  64 gacattgtggttggtgactttgatcaaccacaatttcacaa 104  Q
    |||||||||||||||||| |||||| |||||||| ||||||    
T  46321359 gacattgtggttggtgacattgatcgaccacaatgtcacaa 46321399  T

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Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 47 - 110
Target Start/End: Complemental strand, 16193890 - 16193827
Alignment:
Q  47 tcggaaaacacttgggtgacattgtggttggtgactttgatcaaccacaatttcacaagtgtac 110  Q
    ||||| || |||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||    
T  16193890 tcggataatacttgggtgacattgtggttggtgacattggtcaaccacaatgtcacaagtgtac 16193827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 369571 - 369519
Alignment:
Q  56 acttgggtgacattgtggttggtgactttgatcaaccacaatttcacaagtgt 108  Q
    ||||| |||||||||||||||||||| |||| |||||||||| ||||||||||    
T  369571 acttgagtgacattgtggttggtgacattgaccaaccacaatgtcacaagtgt 369519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 2543898 - 2543848
Alignment:
Q  53 aacacttgggtgacattgtggttggtgactttgatcaaccacaatttcaca 103  Q
    ||||||||||||||||||||||||||||| |||  |||||||||| |||||    
T  2543898 aacacttgggtgacattgtggttggtgacattggccaaccacaatgtcaca 2543848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 24360586 - 24360516
Alignment:
Q  1 caagtgcttcaactaacccataaaattaccaataactcactatatt-tcggaaaacacttgggtgacattg 70  Q
    ||||||||||||||| ||  ||||||||||||||||||||| |||| |   |||| |||||||||||||||    
T  24360586 caagtgcttcaactacccagtaaaattaccaataactcactttattctaaaaaaatacttgggtgacattg 24360516  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 11448230 - 11448193
Alignment:
Q  43 tatttcggaaaacacttgggtgacattgtggttggtga 80  Q
    ||||||||| || |||||||||||||||||||||||||    
T  11448230 tatttcggataatacttgggtgacattgtggttggtga 11448193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 16275232 - 16275191
Alignment:
Q  5 tgcttcaactaacccataaaattaccaataactcactatatt 46  Q
    |||||||| ||||||||||||||| |||||||||||| ||||    
T  16275232 tgcttcaattaacccataaaattatcaataactcactctatt 16275191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 1600324 - 1600364
Alignment:
Q  7 cttcaactaacccataaaattaccaataactcactatattt 47  Q
    |||||||||| ||||||||||||||||||||| || |||||    
T  1600324 cttcaactaaaccataaaattaccaataactcgctctattt 1600364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 10449454 - 10449508
Alignment:
Q  56 acttgggtgacattgtggttggtgactttgatcaaccacaatttcacaagtgtac 110  Q
    |||||||||||||||||||||||||| |||| |||||||||| ||||||||||||    
T  10449454 acttgggtgacattgtggttggtgacattgaccaaccacaatgtcacaagtgtac 10449508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 44938793 - 44938855
Alignment:
Q  48 cggaaaacacttgggtgacattgtggttggtgactttgatcaaccacaatttcacaagtgtac 110  Q
    |||| ||||||||||||||||||||||| ||||| |||| |||||| ||| ||||||||||||    
T  44938793 cggataacacttgggtgacattgtggttagtgacattgaccaaccagaatgtcacaagtgtac 44938855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 28739466 - 28739418
Alignment:
Q  55 cacttgggtgacattgtggttggtgactttgatcaaccacaatttcaca 103  Q
    ||||||||||||||||||||||||||| |||  |||||||||| |||||    
T  28739466 cacttgggtgacattgtggttggtgacattggccaaccacaatgtcaca 28739418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 15928080 - 15928133
Alignment:
Q  56 acttgggtgacattgtggttggtgactttgatcaaccacaatttcacaagtgtac 110  Q
    ||||||||||||||||| |||||||| || |||||||||||| | ||||||||||    
T  15928080 acttgggtgacattgtgattggtgacatt-atcaaccacaatgttacaagtgtac 15928133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 28810102 - 28810060
Alignment:
Q  66 cattgtggttggtgactttgatcaaccacaatttcacaagtgt 108  Q
    |||||||||||||||| ||| ||||||||||| ||||||||||    
T  28810102 cattgtggttggtgacattggtcaaccacaatgtcacaagtgt 28810060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 29997893 - 29997852
Alignment:
Q  5 tgcttcaactaacccataaaattaccaataactcactatatt 46  Q
    |||||||| ||||||||||||||| |||||||||||| ||||    
T  29997893 tgcttcaattaacccataaaattatcaataactcactctatt 29997852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 22894052 - 22894000
Alignment:
Q  55 cacttgggtgacattgtggttggtgactttgatcaaccacaatttcacaagtg 107  Q
    ||||||||||||||||||||||||||| |||| |||||||||| |||||||||    
T  22894052 cacttgggtgacattgtggttggtgacattgaccaaccacaatgtcacaagtg 22894000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 29081752 - 29081697
Alignment:
Q  55 cacttgggtgacattgtggttggtgactttgatcaaccacaatttcacaagtgtac 110  Q
    ||||||||||| ||||||||||||||| ||| ||||||||||| ||||||||||||    
T  29081752 cacttgggtgatattgtggttggtgacattggtcaaccacaatgtcacaagtgtac 29081697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 28309087 - 28309135
Alignment:
Q  62 gtgacattgtggttggtgactttgatcaaccacaatttcacaagtgtac 110  Q
    ||||||||||||||| |||| ||||||||||||||| ||||||||||||    
T  28309087 gtgacattgtggttgatgacattgatcaaccacaatatcacaagtgtac 28309135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 11512392 - 11512440
Alignment:
Q  55 cacttgggtgacattgtggttggtgactttgatcaaccacaatttcaca 103  Q
    ||||||||||||||||||||||||||| |||  |||||||||| |||||    
T  11512392 cacttgggtgacattgtggttggtgacattggccaaccacaatgtcaca 11512440  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 32385366 - 32385418
Alignment:
Q  58 ttgggtgacattgtggttggtgactttgatcaaccacaatttcacaagtgtac 110  Q
    ||||||||||||||| |||||||| ||| ||||||||||| | ||||||||||    
T  32385366 ttgggtgacattgtgattggtgacattggtcaaccacaatgtgacaagtgtac 32385418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 36097344 - 36097384
Alignment:
Q  7 cttcaactaacccataaaattaccaataactcactatattt 47  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  36097344 cttcaactaaaccataaaattaccaataactcactttattt 36097384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 36738420 - 36738360
Alignment:
Q  49 ggaaaacacttgggtgacattgtggttggtgactttgatcaaccacaatttcacaagtgta 109  Q
    |||||| | |||||||||||||||||||||||| ||| ||||| ||||| ||| |||||||    
T  36738420 ggaaaatatttgggtgacattgtggttggtgacattggtcaactacaatatcataagtgta 36738360  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 48342793 - 48342847
Alignment:
Q  56 acttgggtgacattgtggttggtgactttgatcaaccacaatttcacaagtgtac 110  Q
    |||||||||||||| ||||||| ||| ||| ||||||||||| |||||| |||||    
T  48342793 acttgggtgacattatggttggcgacattggtcaaccacaatgtcacaaatgtac 48342847  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 110
Target Start/End: Complemental strand, 45046836 - 45046779
Alignment:
Q  54 acacttgggtgacattgtggttggtgactttgatc-aaccacaatttcacaagtgtac 110  Q
    ||||||||||||||||||||||  |||| |||||| ||||| ||| ||||||||||||    
T  45046836 acacttgggtgacattgtggttaatgacattgatcaaaccataatatcacaagtgtac 45046779  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 12745370 - 12745330
Alignment:
Q  7 cttcaactaacccataaaattaccaataactcactatattt 47  Q
    |||||||||| |||||||||||||||||| ||||| |||||    
T  12745370 cttcaactaagccataaaattaccaataattcactttattt 12745330  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 106
Target Start/End: Complemental strand, 26043649 - 26043595
Alignment:
Q  55 cacttgggtgacattgtggttggtg---actttgatcaaccacaatttcacaagt 106  Q
    |||||||||||| ||||||||||||   || ||||||||||||||| ||||||||    
T  26043649 cacttgggtgacgttgtggttggtggtgacattgatcaaccacaatatcacaagt 26043595  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 50331443 - 50331403
Alignment:
Q  7 cttcaactaacccataaaattaccaataactcactatattt 47  Q
    |||||||||| ||||||||||||||||||||| || |||||    
T  50331443 cttcaactaaaccataaaattaccaataactcgctctattt 50331403  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 25099402 - 25099349
Alignment:
Q  55 cacttgggtgacattgtggttggtgactttgatcaaccacaatttcacaagtgt 108  Q
    |||||| |||| ||||||||||||||||||| ||||||||||| ||||||||||    
T  25099402 cacttgagtgaaattgtggttggtgactttggtcaaccacaatgtcacaagtgt 25099349  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 7211865 - 7211913
Alignment:
Q  55 cacttgggtgacattgtggttggtgactttgatcaaccacaatttcaca 103  Q
    ||||||||||||||||||||||||||| |||  |||||||||| |||||    
T  7211865 cacttgggtgacattgtggttggtgacattggccaaccacaatgtcaca 7211913  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 17272704 - 17272752
Alignment:
Q  55 cacttgggtgacattgtggttggtgactttgatcaaccacaatttcaca 103  Q
    ||||||||||||||||||||||||||| |||  |||||||||| |||||    
T  17272704 cacttgggtgacattgtggttggtgacattggccaaccacaatgtcaca 17272752  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 32315712 - 32315767
Alignment:
Q  55 cacttgggtgacattgtggttggtgactttgatcaaccacaatttcacaagtgtac 110  Q
    |||||| |||||||||||||||||||| |||  |||||||||| |||||| |||||    
T  32315712 cacttgcgtgacattgtggttggtgacattggccaaccacaatgtcacaattgtac 32315767  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 12978274 - 12978314
Alignment:
Q  7 cttcaactaacccataaaattaccaataactcactatattt 47  Q
    |||||||||| ||||||||||||||||||||| || |||||    
T  12978274 cttcaactaaaccataaaattaccaataactcgctctattt 12978314  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 896266 - 896322
Alignment:
Q  47 tcggaaaacacttgggtgacattgtggttggtgactttgatcaaccacaatttcaca 103  Q
    ||||| ||||||||||||| ||||||||||||||  ||||||||||||||| |||||    
T  896266 tcggataacacttgggtgagattgtggttggtgatattgatcaaccacaatgtcaca 896322  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 5215725 - 5215675
Alignment:
Q  53 aacacttgggtgacattgtggttggtgactttgatcaaccacaatttcaca 103  Q
    |||||||||||||||||||||||| |||| ||| ||||||||||| |||||    
T  5215725 aacacttgggtgacattgtggttgatgacattggtcaaccacaatatcaca 5215675  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 12605701 - 12605653
Alignment:
Q  62 gtgacattgtggttggtgactttgatcaaccacaatttcacaagtgtac 110  Q
    |||||||||||||||||||| ||| ||||||||||| ||||| ||||||    
T  12605701 gtgacattgtggttggtgacattggtcaaccacaatgtcacacgtgtac 12605653  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 42772108 - 42772065
Alignment:
Q  65 acattgtggttggtgactttgatcaaccacaatttcacaagtgt 108  Q
    ||||||||||||||||| |||| |||||||||| ||||||||||    
T  42772108 acattgtggttggtgacattgaccaaccacaatgtcacaagtgt 42772065  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 7755341 - 7755393
Alignment:
Q  55 cacttgggtgacattgtggttggtgactttgatcaaccacaatttcacaagtg 107  Q
    ||||||||||||||||||||||||||| |||  |||||||||| |||||||||    
T  7755341 cacttgggtgacattgtggttggtgacattggccaaccacaatgtcacaagtg 7755393  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 13421841 - 13421801
Alignment:
Q  56 acttgggtgacattgtggttggtgactttgatcaaccacaa 96  Q
    |||||||||||||||||||||||||| |||| |||||||||    
T  13421841 acttgggtgacattgtggttggtgacattgaccaaccacaa 13421801  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 6467556 - 6467595
Alignment:
Q  7 cttcaactaacccataaaattaccaataactcactatatt 46  Q
    ||||||||||||||||||||||||||||||| ||| ||||    
T  6467556 cttcaactaacccataaaattaccaataactaactttatt 6467595  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 20443202 - 20443272
Alignment:
Q  1 caagtgcttcaactaacccataaaattaccaataactcactatatt-tcggaaaacacttgggtgacattg 70  Q
    ||||||||||||||| ||  ||||||||||||||||||||| |||| |   |||| |||||||||||||||    
T  20443202 caagtgcttcaactacccagtaaaattaccaataactcactttattctaaaaaaatacttgggtgacattg 20443272  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 81
Target Start/End: Original strand, 5913519 - 5913547
Alignment:
Q  53 aacacttgggtgacattgtggttggtgac 81  Q
    |||||||||||||||||||||||||||||    
T  5913519 aacacttgggtgacattgtggttggtgac 5913547  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 21587682 - 21587642
Alignment:
Q  7 cttcaactaacccataaaattaccaataactcactatattt 47  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  21587682 cttcaactaaaccataaaattaccaataactcactttattt 21587642  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 33763457 - 33763505
Alignment:
Q  49 ggaaaacacttgggtgacattgtggttggtgactttgatcaaccacaat 97  Q
    |||||| | |||||||||||||||||||||||| ||| |||||||||||    
T  33763457 ggaaaataattgggtgacattgtggttggtgacattggtcaaccacaat 33763505  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 23141237 - 23141197
Alignment:
Q  7 cttcaactaacccataaaattaccaataactcactatattt 47  Q
    |||||||||| ||||||||||||||||||||| || |||||    
T  23141237 cttcaactaaaccataaaattaccaataactcgctctattt 23141197  T

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Target: scaffold0110 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 26512 - 26559
Alignment:
Q  62 gtgacattgtggttggtgactttgatcaaccacaatttcacaagtgta 109  Q
    |||||||||||||||||||| ||| |||| |||||| |||||||||||    
T  26512 gtgacattgtggttggtgacattggtcaaacacaatatcacaagtgta 26559  T

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