View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15397_low_2 (Length: 483)
Name: NF15397_low_2
Description: NF15397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15397_low_2 |
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| [»] chr2 (11 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 483
Target Start/End: Complemental strand, 39815611 - 39815111
Alignment:
| Q |
1 |
cattgtagatcaaaatgagcacataatgtgaacctctagattcaacaactcttaaaagttgaagcatctatcattcagttcatttgtattttcctataaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39815611 |
cattgtagatcaaaatgagcacataatgtgaacctctagattcagcaactcttaaaagttgaagcatctatcattcagttcatttgtattttcctataaa |
39815512 |
T |
|
| Q |
101 |
tatataagactcacattgtaatagaaattctatgagaaaagaataatataaataatgtctcatcttctctatctctattctcttgctccatttttagcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39815511 |
tatataagactcacattgtaatagaaattctatgagaaaagaataatataaataatgtctcatcttctctatctctattctcttgctccatttttagcaa |
39815412 |
T |
|
| Q |
201 |
atgcaaaattattagttttcacatcaagcacccataaacccttgtgtatatgaatcattattcattaagatttctttgtggttcaaagaaattaggaatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39815411 |
atgcaaaattattagttttcacatcaagcacccataaacccttgtgtatatgaatcattattcattaagatttctttgtggttcaaagaaattaggaatt |
39815312 |
T |
|
| Q |
301 |
ttattgtccagcttgtaatgc------------------aggtactataacagactcatgttgtgcattaaggatgttttgcattgcatcctcactcact |
382 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39815311 |
ttattgtccagcttgtaatgcaggtgcaacccttggggcaggtactataacagactcatgttgtgcattaaggatgttttgcattgcatcctcactcact |
39815212 |
T |
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| Q |
383 |
ccaaaagcagcagcaagctcaggtcccatcatgctcttcataagtgacgtggcaccaaccaaaaactgtggcttattcttctgagctgaagttgtgaatc |
482 |
Q |
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| T |
39815211 |
ccaaaagcagcagcaagctcaggtcccatcatgctcttcataagtgacgtggcaccaaccaaaaactgtggcttattcttctgagctgaagttgtgaatc |
39815112 |
T |
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| Q |
483 |
c |
483 |
Q |
| |
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| T |
39815111 |
c |
39815111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 9 - 480
Target Start/End: Complemental strand, 39922803 - 39922355
Alignment:
| Q |
9 |
atcaaaatgagcacataatgtgaacctctagattcaacaactcttaaaagttgaagcatctatcattcagttcatttgtattttcctataaatatataag |
108 |
Q |
| |
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|||| ||||| | |||||| ||| ||||||||| ||| |||||||||| ||||||| ||||||||| || |||||||||||||||||||||||| || |
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| T |
39922803 |
atcagaatgaactcataatatgagcctctagatacaagaactcttaaa-gttgaaggatctatcatacatttcatttgtattttcctataaata----ag |
39922709 |
T |
|
| Q |
109 |
actcacattgtaatagaaattctatgagaaaagaataatataaataatgtctcatcttctctatctctattctcttgctccatttttagcaaatgcaaaa |
208 |
Q |
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|||||||||||||||||||||||||||||| |||||| |||||||| | ||||||||||||||||||| |||||||||||||| |
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| T |
39922708 |
actcacattgtaatagaaattctatgagaagagaatattataaatactctctcatcttctctatctct------------------tagcaaatgcaaaa |
39922627 |
T |
|
| Q |
209 |
ttattagttttcacatcaagcacccataaacccttgtgtatatgaatcattattcattaagatttctttgtggttcaaagaaattaggaattttattgtc |
308 |
Q |
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||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||| |||||| ||||||| ||||||||||||| |
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| T |
39922626 |
ttattggttttcacatcaagcacccatcaacccatgtgtatatgaatcattattcgttaagatttctttttggttcgaagaaatcgagaattttattgtc |
39922527 |
T |
|
| Q |
309 |
cagcttgtaatgcaggtactataacagactcatgttgtgcattaaggatgttttgcattgcatcctcactcactccaaaagcagcagcaagctcaggtcc |
408 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
39922526 |
cagcttgtaatgcaggtactataacagcctcatgttgtgcattaaggatgttttgcattgcatccacactcactccaaaagcagcagcaagttcaggtcc |
39922427 |
T |
|
| Q |
409 |
catcatgctcttcataagtgacgtggcaccaaccaaaaactgtggcttattcttctgagctgaagttgtgaa |
480 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39922426 |
catcatgctcttcataagtgacgtggcaccgaccaaaaactgtggcttgttcttctgagctgaagttgtgaa |
39922355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 187 - 480
Target Start/End: Complemental strand, 39903047 - 39902754
Alignment:
| Q |
187 |
tccatttttagcaaatgcaaaattattagttttcacatcaagcacccataaacccttgtgtatatgaatcattattcattaagatttctttgtggttcaa |
286 |
Q |
| |
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|||||||||| ||||| ||||||||||||||||||||||||||||||| | |||| | | ||||||||||||||||||||||||||| ||||||||||| |
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| T |
39903047 |
tccatttttaagaaatgaaaaattattagttttcacatcaagcacccatcatccctcgagcatatgaatcattattcattaagatttcgttgtggttcaa |
39902948 |
T |
|
| Q |
287 |
agaaattaggaattttattgtccagcttgtaatgcaggtactataacagactcatgttgtgcattaaggatgttttgcattgcatcctcactcactccaa |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
39902947 |
agaaattaggaattttattgtccagcttgtaatgcaggtactataacagactcatgttgtgcattaaggatgttttgcattgaatcctcactcactccaa |
39902848 |
T |
|
| Q |
387 |
aagcagcagcaagctcaggtcccatcatgctcttcataagtgacgtggcaccaaccaaaaactgtggcttattcttctgagctgaagttgtgaa |
480 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
39902847 |
aagcagcagcaagttcaggtcccatcatgctcttcataagtgacgtggcaccgaccaaaaactgtggcttattcttctgagctgaagttgtgaa |
39902754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 165 - 480
Target Start/End: Complemental strand, 39806162 - 39805829
Alignment:
| Q |
165 |
ttctctatctctattctcttgctccatttttagcaaatgcaaaattattagttttcacatcaagcacccataaacccttgtgtatatgaatcattattca |
264 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
39806162 |
ttctctatctctattctcttgctccatttttagcaaaagcaaaactaatagttttcacatcaagcacccatcaacccttgtgcatatgaatcattattca |
39806063 |
T |
|
| Q |
265 |
ttaagatttctttgtggttcaaagaaattaggaattttattgtccagcttgtaatgcaggt------------------actataacagactcatgttgt |
346 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||| |||||| |
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| T |
39806062 |
ttaagatttctttgtggttcaaagaaattaggaattttattgtccagcttatagtgcaggtgcagcccgtggggcaggtactataacagactcctgttgt |
39805963 |
T |
|
| Q |
347 |
gcattaaggatgttttgcattgcatcctcactcactccaaaagcagcagcaagctcaggtcccatcatgctcttcataagtgacgtggcaccaaccaaaa |
446 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39805962 |
gcattaaggatgttttgcattgcatcctcactcactccaaaagcagcagcaagttcaggtcccatcatgctcttcataagtgacgtggcaccgaccaaaa |
39805863 |
T |
|
| Q |
447 |
actgtggcttattcttctgagctgaagttgtgaa |
480 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
39805862 |
actgtggcttattcttctgagctgaagttgtgaa |
39805829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 322 - 480
Target Start/End: Complemental strand, 39911370 - 39911212
Alignment:
| Q |
322 |
aggtactataacagactcatgttgtgcattaaggatgttttgcattgcatcctcactcactccaaaagcagcagcaagctcaggtcccatcatgctcttc |
421 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39911370 |
aggtactataacagactcctgttgtgcattaaggatgttttgcattgaatcctcactcactccaaaagcagcagcaagttcaggtcccatcatgctcttc |
39911271 |
T |
|
| Q |
422 |
ataagtgacgtggcaccaaccaaaaactgtggcttattcttctgagctgaagttgtgaa |
480 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
39911270 |
ataagtgacgtggcaccgaccaaaaactgtggcttattcttctgagctgaagttgtgaa |
39911212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 323 - 480
Target Start/End: Complemental strand, 39928208 - 39928051
Alignment:
| Q |
323 |
ggtactataacagactcatgttgtgcattaaggatgttttgcattgcatcctcactcactccaaaagcagcagcaagctcaggtcccatcatgctcttca |
422 |
Q |
| |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39928208 |
ggtagtataacagactcatgttgcgcattaaggatgttttgcattgcatcctcactcactccaaaagcagcagcaagctcaggtcccatcatgctcttca |
39928109 |
T |
|
| Q |
423 |
taagtgacgtggcaccaaccaaaaactgtggcttattcttctgagctgaagttgtgaa |
480 |
Q |
| |
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||||||| |||||||| | ||||||||||||||| ||||||||||||||||||||||| |
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| T |
39928108 |
taagtgatgtggcaccgatcaaaaactgtggcttgttcttctgagctgaagttgtgaa |
39928051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 9 - 189
Target Start/End: Complemental strand, 39911705 - 39911530
Alignment:
| Q |
9 |
atcaaaatgagcacataatgtgaacctctagattcaacaactcttaaaagttgaagcatctatcattcagttcatttgtattttcctataaatatataag |
108 |
Q |
| |
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|||||||| | ||||||||| | |||||||||||||||||||||| | ||||||||||||||||| || |||||||||||| ||||||||||| || |
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| T |
39911705 |
atcaaaatcaacacataatgatagcctctagattcaacaactcttaca-gttgaagcatctatcatacatttcatttgtattctcctataaata----ag |
39911611 |
T |
|
| Q |
109 |
actcacattgtaatagaaattctatgagaaaagaataatataaataatgtctcatcttctctatctctattctcttgctcc |
189 |
Q |
| |
|
|||| |||| ||||||||||| ||||||| ||||||||||||||| | ||||||||||| ||| |||||||||||||||| |
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| T |
39911610 |
actcccattataatagaaattttatgagaggagaataatataaatactctctcatcttctatatttctattctcttgctcc |
39911530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 9 - 131
Target Start/End: Complemental strand, 39806277 - 39806159
Alignment:
| Q |
9 |
atcaaaatgagcacataatgtgaacctctagattcaacaactcttaaaagttgaagcatctatcattcagttcatttgtattttcctataaatatataag |
108 |
Q |
| |
|
|||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||| |
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| T |
39806277 |
atcaaaatgaacacataatatgagcctctagattcaacaactcttaaaagttgaagcatctatcattcagttcatttatattttcctatca----ataaa |
39806182 |
T |
|
| Q |
109 |
actcacattgtaatagaaattct |
131 |
Q |
| |
|
| ||||||||||||||||||||| |
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| T |
39806181 |
aatcacattgtaatagaaattct |
39806159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 39903176 - 39903084
Alignment:
| Q |
9 |
atcaaaatgagcacataatgtgaacctctagattcaacaactcttaaaagttgaagcatctatcattcagttcatttgtattttcctataaata |
102 |
Q |
| |
|
|||||||||| |||||||||||| ||||| ||||||||||||||| | |||||||||||||||||| ||||||||||||| |||| ||||||| |
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| T |
39903176 |
atcaaaatgaacacataatgtgagcctcttgattcaacaactctt-acagttgaagcatctatcatacagttcatttgtaaattccaataaata |
39903084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 39826241 - 39826193
Alignment:
| Q |
432 |
tggcaccaaccaaaaactgtggcttattcttctgagctgaagttgtgaa |
480 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39826241 |
tggcaccgaccaaaaactgtggcttgttcttctgagctgaagttgtgaa |
39826193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 260
Target Start/End: Complemental strand, 39911495 - 39911434
Alignment:
| Q |
199 |
aaatgcaaaattattagttttcacatcaagcacccataaacccttgtgtatatgaatcatta |
260 |
Q |
| |
|
||||| ||||||||||||||||| |||| || ||||| | || ||||| ||||||||||||| |
|
|
| T |
39911495 |
aaatgaaaaattattagttttcaaatcatgcgcccatcatccattgtgcatatgaatcatta |
39911434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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