View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15397_low_3 (Length: 421)
Name: NF15397_low_3
Description: NF15397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15397_low_3 |
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| [»] scaffold0006 (1 HSPs) |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: scaffold0006 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 11 - 405
Target Start/End: Original strand, 275509 - 275889
Alignment:
| Q |
11 |
cacagaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaagaagtttgatttaagaagtttgataaaataataaattccaacctttt |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
275509 |
cacagaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaa--------------gaagtttgataaaataataaattccaacctttt |
275594 |
T |
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| Q |
111 |
tcacgctaccagtagattttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagttt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
275595 |
tcacgctaccagtagattttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagttt |
275694 |
T |
|
| Q |
211 |
cttgtcaagcaaagtgctcttcctgctattttcttggctattttttaaggatcggttaaggaatgcacattgtttcaaggcctcttccagtgcatgacat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
275695 |
cttgtcaagcaaagtgctcttcctgctattttcttggctattttttaaggatcggttaaggaatgcacattgtttcaaggcctcttccagtgcatgacat |
275794 |
T |
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| Q |
311 |
gcaaagttataactctcattagttaatgatccttcctccaacaattgagaggcctttggatacaaacgatcatatctctccttcttcgaacaaat |
405 |
Q |
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| T |
275795 |
gcaaagttataactctcattagttaatgatccttcctccaacaattgagaggcctttggatacaaacgatcatatctctccttcttcgaacaaat |
275889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 11 - 405
Target Start/End: Original strand, 28399 - 28779
Alignment:
| Q |
11 |
cacagaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaagaagtttgatttaagaagtttgataaaataataaattccaacctttt |
110 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28399 |
cacagaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaa--------------gaagtttgataaaataataaattccaacctttt |
28484 |
T |
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| Q |
111 |
tcacgctaccagtagattttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagttt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28485 |
tcacgctaccagtagattttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagttt |
28584 |
T |
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| Q |
211 |
cttgtcaagcaaagtgctcttcctgctattttcttggctattttttaaggatcggttaaggaatgcacattgtttcaaggcctcttccagtgcatgacat |
310 |
Q |
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| T |
28585 |
cttgtcaagcaaagtgctcttcctgctattttcttggctattttttaaggatcggttaaggaatgcacattgtttcaaggcctcttccagtgcatgacat |
28684 |
T |
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| Q |
311 |
gcaaagttataactctcattagttaatgatccttcctccaacaattgagaggcctttggatacaaacgatcatatctctccttcttcgaacaaat |
405 |
Q |
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| T |
28685 |
gcaaagttataactctcattggttaatgatccttcctccaacaattgagaggcctttggatacaaacgatcatatctctccttcttcgaacaaat |
28779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 11 - 405
Target Start/End: Original strand, 26396113 - 26396494
Alignment:
| Q |
11 |
cacagaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaagaagtttgatttaagaagtttgataaaataataaattccaacctttt |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26396113 |
cacagaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaagaagtttgat--------------aaaataataaattccaacctttt |
26396198 |
T |
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| Q |
111 |
tcacgctaccagtagattttctctttcgacctctttcaatgccgctctttattctttt-cggtgccccttttgtttttgaatcttgaggatcaagtagtt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26396199 |
tcacgctaccagtagattttctctttcgacctctttcaatgccgctctttattctttttcggtgccccttttgtttttgaatcttgaggatcaagtagtt |
26396298 |
T |
|
| Q |
210 |
tcttgtcaagcaaagtgctcttcctgctattttcttggctattttttaaggatcggttaaggaatgcacattgtttcaaggcctcttccagtgcatgaca |
309 |
Q |
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| T |
26396299 |
tcttgtcaagcaaagtgctcttcctgctattttcttggctattttttaaggatcggttaaggaatgcacattgtttcaaggcctcttccagtgcatgaca |
26396398 |
T |
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| Q |
310 |
tgcaaagttataactctcattagttaatgatccttcctccaacaattgagaggcctttggatacaaacgatcatatctctccttcttcgaacaaat |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26396399 |
tgcaaagttataactctcattagttaatgatccttcctccaacaattgagaggcctttggatacaaacgatcatatctctctttcttcgaacaaat |
26396494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 26460430 - 26460346
Alignment:
| Q |
129 |
ttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagtttctt |
213 |
Q |
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||||||| |||||||| ||||| || ||||| ||||||||||| || |||||||| |||| || ||||||||||| |||||| |
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| T |
26460430 |
ttctcttacgacctctctcaatcccactcttgattcttttcggagctccttttgtgtttgctggtttaggatcaagtaatttctt |
26460346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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