View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15397_low_7 (Length: 261)
Name: NF15397_low_7
Description: NF15397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15397_low_7 |
 | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
| [»] scaffold0038 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0019 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 29 - 254
Target Start/End: Original strand, 55775 - 56000
Alignment:
| Q |
29 |
ggcttgtagacaccatggaactcaatttatcatttttctttggaaatcgacaatcctcagaaataatgtttgacagatttggcatcctaaaaatgccact |
128 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||| || | || ||||||||| ||||||||||||||| | ||| |
|
|
| T |
55775 |
ggcttgtaaacaccatggaactcaatttatcatttttctttggaagtagacaatcctcaaaatttatttttgacagagctggcatcctaaaaatactact |
55874 |
T |
|
| Q |
129 |
tggtaacctaagcattccatttcctactatatttaagttaaccagccccgtgagattttgaaatgaaactggcactttttcaatggaagtgccaaacaaa |
228 |
Q |
| |
|
||| || ||||||||||||||||||| |||| ||||||||| ||||||||||| |||||||||||||| |||| |||||| ||||||||| |||||||| |
|
|
| T |
55875 |
tggcaatctaagcattccatttcctattataattaagttaagaagccccgtgagtttttgaaatgaaacaggcagtttttcgatggaagtgtcaaacaaa |
55974 |
T |
|
| Q |
229 |
cgaatatatcttatattcttcatctc |
254 |
Q |
| |
|
|||||| | |||||||||||||||| |
|
|
| T |
55975 |
cgaatacgtgttatattcttcatctc |
56000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 90 - 219
Target Start/End: Complemental strand, 28524822 - 28524693
Alignment:
| Q |
90 |
aataatgtttgacagatttggcatcctaaaaatgccacttggtaacctaagcattccatttcctactatatttaagttaaccagccccgtgagattttga |
189 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| ||| ||||| ||||||||||| |||||| |||| | |||| || ||||| |||||||||||| |
|
|
| T |
28524822 |
aataatgtctgacaaatttggcatcctaaaaatgctactaggtaatctaagcattccttttccttctatgtctaagagaataagcccagtgagattttga |
28524723 |
T |
|
| Q |
190 |
aatgaaactggcactttttcaatggaagtg |
219 |
Q |
| |
|
||||||||||||| |||||||||||||||| |
|
|
| T |
28524722 |
aatgaaactggcaatttttcaatggaagtg |
28524693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 92 - 219
Target Start/End: Complemental strand, 28190978 - 28190851
Alignment:
| Q |
92 |
taatgtttgacagatttggcatcctaaaaatgccacttggtaacctaagcattccatttcctactatatttaagttaaccagccccgtgagattttgaaa |
191 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||| ||||||| |||||| |||||| |||| |||||| || ||| ||||||||||||||| |
|
|
| T |
28190978 |
taatgtctgacagatttggcatcctaaaaatgctacttggcaacctaaccattccttttccttttatagttaagtaaagaagcttcgtgagattttgaaa |
28190879 |
T |
|
| Q |
192 |
tgaaactggcactttttcaatggaagtg |
219 |
Q |
| |
|
|||||||||||||| || |||||||||| |
|
|
| T |
28190878 |
tgaaactggcacttctttaatggaagtg |
28190851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 92 - 219
Target Start/End: Complemental strand, 28328184 - 28328057
Alignment:
| Q |
92 |
taatgtttgacagatttggcatcctaaaaatgccacttggtaacctaagcattccatttcctactatatttaagttaaccagccccgtgagattttgaaa |
191 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| ||| ||||| ||||||||||| ||||| ||| ||||||||| ||||| |||||||||||||| |
|
|
| T |
28328184 |
taatgtctgacaaatttggcatcctaaaaatgctactaggtaatctaagcattccttttccctttatttttaagttactaagcccagtgagattttgaaa |
28328085 |
T |
|
| Q |
192 |
tgaaactggcactttttcaatggaagtg |
219 |
Q |
| |
|
||||||||||| |||||||||||||||| |
|
|
| T |
28328084 |
tgaaactggcaatttttcaatggaagtg |
28328057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 92 - 219
Target Start/End: Complemental strand, 28505820 - 28505693
Alignment:
| Q |
92 |
taatgtttgacagatttggcatcctaaaaatgccacttggtaacctaagcattccatttcctactatatttaagttaaccagccccgtgagattttgaaa |
191 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| ||| ||||| ||||||||||| ||||| ||| ||||||||| ||||| |||||||||||||| |
|
|
| T |
28505820 |
taatgtctgacaaatttggcatcctaaaaatgctactaggtaatctaagcattccttttccctttatttttaagttactaagcccagtgagattttgaaa |
28505721 |
T |
|
| Q |
192 |
tgaaactggcactttttcaatggaagtg |
219 |
Q |
| |
|
||||||||||| |||||||||||||||| |
|
|
| T |
28505720 |
tgaaactggcaatttttcaatggaagtg |
28505693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 99 - 220
Target Start/End: Complemental strand, 28238954 - 28238833
Alignment:
| Q |
99 |
tgacagatttggcatcctaaaaatgccacttggtaacctaagcattccatttcctactatatttaagttaaccagccccgtgagattttgaaatgaaact |
198 |
Q |
| |
|
||||||||||||||| ||| ||||| |||||| ||||||||||||||||||||| ||||| |||| | |||||||||||||||||||||||||| |
|
|
| T |
28238954 |
tgacagatttggcatactacaaatgatacttggcaacctaagcattccatttccttctatacttaatcgacgaagccccgtgagattttgaaatgaaaca |
28238855 |
T |
|
| Q |
199 |
ggcactttttcaatggaagtgc |
220 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
28238854 |
ggcagtttttcaatggaagtgc |
28238833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 218
Target Start/End: Complemental strand, 28246007 - 28245816
Alignment:
| Q |
27 |
tgggcttgtagacaccatggaactcaatttatcatttttctttggaaatcgacaatcctcagaaataatgtttgacagatttggcatcctaaaaatgcca |
126 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| | || |||||| ||| | | || |||| ||||||||||||||||| |||||||||| | |
|
|
| T |
28246007 |
tgggcttgtagacaccatggaactccatttatcatctagtttgggaaatatgcaacggtaaaaagtaatctttgacagatttggcattctaaaaatgcta |
28245908 |
T |
|
| Q |
127 |
cttggtaacctaagcattccatttcctactatatttaagttaaccagccccgtgagattttgaaatgaaactggcactttttcaatggaagt |
218 |
Q |
| |
|
||||| ||||| ||| | |||||||| ||||| ||| | |||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
28245907 |
cttggcaacctttgcactacatttccttctataaaaaagatttgcagccccgtgagattttgaaatgaaactggcaatttgtcaatggaagt |
28245816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 219
Target Start/End: Complemental strand, 28192896 - 28192854
Alignment:
| Q |
177 |
cgtgagattttgaaatgaaactggcactttttcaatggaagtg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28192896 |
cgtgagattttgaaatgaaactggcactttttcaatggaagtg |
28192854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 99 - 220
Target Start/End: Complemental strand, 39116 - 38995
Alignment:
| Q |
99 |
tgacagatttggcatcctaaaaatgccacttggtaacctaagcattccatttcctactatatttaagttaaccagccccgtgagattttgaaatgaaact |
198 |
Q |
| |
|
||||||||||||||| ||| ||||| |||||| ||||||||||||||||||||| ||||| |||| | |||||||||||||||||||||||||| |
|
|
| T |
39116 |
tgacagatttggcatactacaaatgatacttggcaacctaagcattccatttccttctatacttaatcgacgaagccccgtgagattttgaaatgaaaca |
39017 |
T |
|
| Q |
199 |
ggcactttttcaatggaagtgc |
220 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
39016 |
ggcagtttttcaatggaagtgc |
38995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 218
Target Start/End: Complemental strand, 46169 - 45978
Alignment:
| Q |
27 |
tgggcttgtagacaccatggaactcaatttatcatttttctttggaaatcgacaatcctcagaaataatgtttgacagatttggcatcctaaaaatgcca |
126 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| | || |||||| ||| | | || |||| ||||||||||||||||| |||||||||| | |
|
|
| T |
46169 |
tgggcttgtagacaccatggaactccatttatcatctagtttgggaaatatgcaacggtaaaaagtaatctttgacagatttggcattctaaaaatgcta |
46070 |
T |
|
| Q |
127 |
cttggtaacctaagcattccatttcctactatatttaagttaaccagccccgtgagattttgaaatgaaactggcactttttcaatggaagt |
218 |
Q |
| |
|
||||| ||||| ||| | |||||||| ||||| ||| | |||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
46069 |
cttggcaacctttgcactacatttccttctataaaaaagatttgcagccccgtgagattttgaaatgaaactggcaatttgtcaatggaagt |
45978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University