View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15397_low_8 (Length: 253)
Name: NF15397_low_8
Description: NF15397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15397_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 17443142 - 17442910
Alignment:
| Q |
1 |
gaaaacataaatgatttcatgacgaaagttatgaaagttgtgaatcaaatcagattgttgggagaacaatttcttgatagcagaattgtagaaaaagtct |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17443142 |
gaaaacataattgatttcatgacgaaagttatgaaagttgtgaatcaaatcagattgttgggagaacaatttcttgatagcagaattgtagaaaaagtct |
17443043 |
T |
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| Q |
101 |
tggtggttttacctgaaagattcgaatcaaagatttctgcacttgaagaatcaaaagatctttccaagataaccttaacagagcttataaatgctcttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17443042 |
tggtggttttacctgaaagattcgaatcaaagatttctgcacttgaagaatcaaaagatctttccaagataaccttaacagagcttataaatgctcttca |
17442943 |
T |
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| Q |
201 |
agctcaagagcagagaagacttttgagacaaga |
233 |
Q |
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| T |
17442942 |
agctcaagagcagagaagacttttgagacaaga |
17442910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 3059058 - 3059290
Alignment:
| Q |
1 |
gaaaacataaatgatttcatgacgaaagttatgaaagttgtgaatcaaatcagattgttgggagaacaatttcttgatagcagaattgtagaaaaagtct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3059058 |
gaaaacataaatgatttcatgacgaaagttatgaaagttgtgaatcaaattagattgttgggagaacaatttcttgatagcagaattgtagaaaaagtct |
3059157 |
T |
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| Q |
101 |
tggtggttttacctgaaagattcgaatcaaagatttctgcacttgaagaatcaaaagatctttccaagataaccttaacagagcttataaatgctcttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3059158 |
tggtggttttacctgaaagattcgaatcaaagatttttgcacttgaagaatcaaaagatctttccaagataaccttaacagagcttataaatgctcttca |
3059257 |
T |
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| Q |
201 |
agctcaagagcagagaagacttttgagacaaga |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
3059258 |
agctcaagagcagagaagacttttgagacaaga |
3059290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 4873701 - 4873933
Alignment:
| Q |
1 |
gaaaacataaatgatttcatgacgaaagttatgaaagttgtgaatcaaatcagattgttgggagaacaatttcttgatagcagaattgtagaaaaagtct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4873701 |
gaaaacataaatgatttcatgacgaaagttatgaaagttgtgaatcaaataagattgttgggagaacaatttcttgatagcagaattgtagaaaaagtct |
4873800 |
T |
|
| Q |
101 |
tggtggttttacctgaaagattcgaatcaaagatttctgcacttgaagaatcaaaagatctttccaagataaccttaacagagcttataaatgctcttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4873801 |
tggtggttttacctgaaagattcgaatcaaagatttctgcacttgaagaatcaaaagatctttccaagataaccttaacagagcttataaatgctcttca |
4873900 |
T |
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| Q |
201 |
agctcaagagcagagaagacttttgagacaaga |
233 |
Q |
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||||||||||||||||||| ||||||||||||| |
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| T |
4873901 |
agctcaagagcagagaagaattttgagacaaga |
4873933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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